Ligilactobacillus ruminis: LRC_03480
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Entry
LRC_03480 CDS
T01626
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRC_03480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_03480 (mfd)
Enzymes [BR:
lrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRC_03480 (mfd)
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LRC_03480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
Cas3-like_C_2
AAA_22
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AEN77667
UniProt:
G2SRC2
LinkDB
All DBs
Position
369283..372822
Genome browser
AA seq
1179 aa
AA seq
DB search
MQLNELLSNTAEMTGFHDSLKEKGRHMITGVSGSVRTLLLADLEEKFQVPLIVVCDDLFH
AQSLEEDLTNVFAEEDVDLFPVEENFAAAISASSPEYKAQRVKTLQKMADGSSKIVVTSV
SGIRRMLCPKDFWLKSTIKFKLGEEIIPEKLKQELCTMGYRAVKMVERPGDFAVRGSIFD
IYALNLENPVRIDLFDTEIDSLRLFDSTDQRSLKKIDEVEILPATDFIASDSMLEKGAAV
LQKNVKDYLAKLDDEEDKKLLADNLRTVADDWHRGILEPEHVVFSEELYGKSKTSLFDYL
SESGMIVFDDYKRLKEKDHELEKSDAQWILEKIEERKLYVKETLGFKISELEKKEQHERI
FMSLLQKGMGRMRFVSLTDIKSRSVQQFFGQLPLLKVETLRYKKTNETVVFLISETERAK
KMLQLLDDLGIKAIETNKDRIEQGAFQIVNGTLQKGFELPLSHLVVLTENELFAKVKKRQ
PRHQTMRNTERLKSYADLKPGDFVVHVNHGIGRFMGMETLEVAGRHQDYMTIIYRDDAKL
FIPVSQLDRIQKYVSSEGKVPKVNKLGSSEWEKTKRKVASKLEDIADELVELYSRRESEK
GHAFPKDDSYQKEFEDAFPYTETPDQLRSAKEIKLDMEKEKPMDRLLIGDVGYGKTEVAL
RAAFKAVEDGKQVAFIAPTTLLVQQHYETMLSRFEGFPVEIGVLSRFSTPKQAKETLLKL
KNGEIDIIVGTHRLLSKDVKFADLGLLIIDEEQRFGVKHKEKLKELKTSVDVLTLTATPI
PRTLNMSMLGVRDLSVIETAPLNRYPIQTYAMEQNYDVVAAGIRREMSRGGQVFYLHNRV
HDIETVVETLNTIVPEARIAYVHGQMSETQMEKILADFIAGEYDVLVTTTIIETGVDIPN
VNTLFVEDADRMGLAQLYQLRGRVGRSNRVAYAYFMYQPDKVLTEDGEKRLEAIKDFTEL
GSGFKIAMRDLSIRGAGNMLGKQQHGFIESVGYDLYTKMLNEAVAKKRGIKPEQKTDCEI
NLNIEAYVPTEYIEDSRQKIEIYKRIHQLNSYAEYEEVQADLTDRFGDYPDECANLLEIG
LLKFYADHAMIERITQYDRKIEILLSKKTAEKLGLRELVASLDDCDLKSTFGEKNNQTLI
TLLCGDKTKETQLLYELQQIAKKIAESLGNFPKKEETEA
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttaatgagctactgtcgaatacggccgaaatgaccggattccatgattcttta
aaggaaaagggacgccatatgataaccggcgtgagcggctcggtgcgcacgcttcttttg
gcggaccttgaagaaaaatttcaagttccgttgatcgtcgtttgcgatgatctgtttcat
gcgcaatcgcttgaagaggacttgacaaacgtttttgctgaagaagacgttgatttgttt
ccggttgaagaaaactttgctgcggcaatttccgcaagttcgccggaatataaggctcag
cgagtcaaaactttgcagaaaatggctgacgggagctcaaaaatcgtcgtgacttccgtg
tcagggataagacgcatgctttgtccgaaggatttttggctcaagagcaccattaagttc
aagctcggcgaagagatcattcctgaaaaattaaaacaagagctttgcacgatggggtac
cgggcggttaaaatggttgaaagacctggagattttgccgtcagaggctcgattttcgat
atttatgcgctcaatttggaaaatccagtgcgcatcgatttgtttgatacggaaatcgac
tctctcagacttttcgattcaacggatcaaagaagtctgaaaaaaatcgatgaagtcgaa
attttgccggcaacggattttatcgcatcagactctatgcttgaaaaaggagccgcggtg
ctgcaaaaaaacgtcaaggactacttggcaaaactcgacgatgaagaagataagaaactg
ttggcggataatctgaggacggtcgccgacgattggcatcgcgggattttggaacccgaa
cacgttgttttttcagaagaactttacgggaaaagcaagacttcgctttttgactacctt
tcagaaagcggaatgatcgtttttgacgattacaaacgcttgaaagaaaaagatcacgag
cttgaaaaaagcgatgcgcagtggatcttggaaaaaatcgaagaacgcaagctctatgtc
aaggaaacgctcggttttaaaatttccgaactcgagaaaaaagagcagcatgaaagaatt
ttcatgtcgctccttcaaaaaggaatgggccgtatgaggtttgtttccttgacggatatc
aaatcgcggagcgtgcagcaattcttcggacagctgccgcttctcaaggtcgaaacgctg
cgctataaaaaaacgaatgaaacggtcgtttttttgatttctgaaacggagcgcgcaaaa
aagatgctgcagctgcttgatgatttgggaatcaaagcaattgaaaccaacaaagacaga
attgaacaaggtgcttttcaaattgtcaacggaacccttcaaaaaggttttgaattgcct
ttaagccatctggtcgtgctgacggaaaatgaacttttcgcaaaagtcaaaaaacgccag
ccaagacatcagaccatgagaaatacggagcgtctgaagagttatgccgatttgaagccc
ggagattttgtcgtgcatgtcaaccatggcattggccgcttcatggggatggagacgctt
gaagttgcaggaaggcaccaagactacatgacgatcatttatcgagacgatgcgaagctt
ttcattcccgtctctcagcttgaccgcattcaaaagtacgtttcttcagaaggcaaggtg
cctaaagtcaacaagctcggaagcagcgaatgggagaagaccaagagaaaagttgcgtca
aagcttgaagacattgcagatgagctggttgaactgtactccaggcgcgagtctgaaaaa
ggtcatgcatttcctaaagacgacagctatcaaaaagagttcgaagatgcttttccttat
accgagacaccggaccagttaaggagcgccaaggaaatcaagcttgatatggaaaaagaa
aagccgatggatcgattgctgattggagacgttggctacggtaaaactgaagttgcgctc
agagcagcgtttaaagcagttgaagacggcaagcaggtggcttttatcgcaccaacgacg
cttttggtgcagcagcactacgaaacgatgctgtcgcgttttgaaggatttccggttgaa
atcggggttttgtcaagattcagcacgccaaagcaagccaaagaaacgcttttgaaactg
aaaaacggtgaaattgacattatcgtcggaactcacaggctgctttcaaaggacgttaaa
tttgccgatttaggtttgctgattattgacgaagaacagcgtttcggggtcaaacacaag
gaaaaactcaaagaactcaaaacgtcggtcgatgttttgacgctgacggcaacaccgatt
ccaaggacgctcaacatgtcgatgcttggcgtcagagacctgtccgtaattgaaactgca
ccgcttaatcgctatccgattcaaacatatgcgatggaacaaaattatgatgtcgtggca
gcaggaatcagacgcgaaatgtcacggggcgggcaagtgttttatcttcacaaccgggtt
catgacattgaaacggttgtcgaaacattgaatacgatcgttccggaagcaagaatcgcc
tatgttcacggacaaatgtcggaaactcagatggaaaaaatattggcggactttattgcc
ggcgaatacgatgttctggtaacgacgacgatcattgaaacaggcgtcgacattccgaac
gtcaacactttgttcgttgaagatgctgatcggatgggactggcacagttgtatcagctc
agaggacgagttggccgttcgaatcgggtggcatatgcatatttcatgtatcagcctgat
aaagttttgaccgaggacggcgaaaaacgtttggaagccattaaagatttcacggagctc
ggctctggatttaaaattgcgatgagagatctttcgattcgcggggccggcaacatgctc
ggaaaacaacagcatggcttcatcgaatccgtcgggtatgacctttatacgaaaatgctc
aacgaagcggtggctaaaaaacgcggcatcaagccggagcaaaaaacggattgcgaaatc
aatctaaatattgaggcatatgttccgacggaatacattgaagattcgagacaaaaaatt
gaaatctataagcgaattcatcagcttaacagctatgccgaatatgaagaagttcaggct
gatctgactgatcgttttggtgattatcctgacgagtgcgccaacctgcttgaaatcgga
ctgctgaagttttatgccgaccatgcgatgatcgaacgaattacgcaatatgacaggaaa
atcgaaattctgttgtcgaagaagacggctgaaaaacttggcttgagagagcttgtggca
agtttggacgactgcgatctgaagtcgacgttcggtgagaaaaacaatcagacgctgatt
acgcttctttgcggtgataaaaccaaggaaacgcagcttttgtacgaattgcaacagatt
gccaaaaaaattgccgagtcattgggcaattttccaaagaaagaggaaaccgaagcatag
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