Ligilactobacillus ruminis: LRC_04160
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Entry
LRC_04160 CDS
T01626
Symbol
sbcC
Name
(GenBank) Exonuclease SbcCD, C subunit
KO
K03546
DNA repair protein SbcC/Rad50
Organism
lrm
Ligilactobacillus ruminis
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_04160 (sbcC)
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LRC_04160 (sbcC)
Archaeal homologous recombinant proteins
LRC_04160 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SbcC_Walker_B
AAA_29
AAA_16
T2SSE
AAA_21
FtsK_SpoIIIE
SAP
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AEN77731
UniProt:
G2SRR6
LinkDB
All DBs
Position
442704..445808
Genome browser
AA seq
1034 aa
AA seq
DB search
MKPLKLKMKNFGPYKDAEVDFTKFSEAPLFLITGATGSGKTTIFDAMCFALYGRSSTDKD
RNVFLLRSDFVEDCKEKTEVELTFSHQGKEYTVNRSFYQTAGQEKNGKITKKAILRYQDE
NGNLVELKGPNEIGVKVTSLLNLSAEQFSKIILLPQGKFKEFLMSDSNKKEKILNQIFGT
DFYDDWVSEIKKQADESRSDSDETKKELLFEQKQAIFSEAEPEAEPFEDWFDALDLQIKS
DEENCAKAKEAEEEMQKKVNEALKKTALAERLEQDFQEFEEVSRKKELLEREQAKINEQT
NYLAELNWAFGCETMVFRKKTSQKRLEELRADIEKQNAEFSETKEKFSKALETKQILLRK
APQKDKAQADFNLWQGRVGIYDEAEQKNAELADLQAQADKSSKKLAEKKAELERKIASKN
ALDKFIEKNSGADDEKHCLELEIQQLKENEKKLQDYKAQQQKAQVLKNEQVVLEKESAEA
SELQKTAEQEYENIQSQWAKLQINELAKLLKPGDACPVCGSLEHPSPAFGDEKTVYVTEN
QVKKAKEKHDEAVADASEKKAKADAKSKEFSERQADFLEKITEFSQSLGYDTIEISELEK
KLDNKRSDNEEKLSQARETARKRTEAEVKLKTLQTEIERGEELVSDLKQELSECQATISG
KKAGLAELEKQLPKQFKTRKELQEQLNQWDEFIKKYDADKENNDKEVSDLDKRRASLQSL
IEKENINLGNESNLFHASEKEIESACLKKGISAERLYELLAEKDRIAEIEREISDFQKKE
ATVSGEYAASQKKIDGKIRPNIEEMKQIQRDEQERHRRAKEFLQQSDNLLNKNKECRRKA
EKVWKNSKEKLELAERKQSLYNVLRGQKGIAPGFSRFVLANYFRSVIEVANVHLDKLTGG
RYNLVLDDTAKANLKNMGLELDVYDDNAGVNRPVHTLSGGESFIFSLSLAMALGEVIQER
NGGISIEAMFIDEGFGTLDDERLQSVLSALQSLENNNRMIGIISHVDKFKEQIPAQIQVT
SKEGISTIGYQTEF
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctttgaaattgaaaatgaaaaattttggaccttataaggatgcggaagttgat
tttaccaagttcagcgaagctccgcttttcttgatcactggtgctaccggaagcggcaaa
acaaccatttttgatgcgatgtgttttgcgctttacggtcggagttcaaccgacaaggat
cgaaacgtcttcttgttgcgcagcgattttgtagaggattgcaaggaaaaaacggaagtc
gaattgacgttttcgcatcaagggaaagaatataccgtcaatcgttcattttatcagacg
gcaggccaagaaaaaaatggcaaaatcaccaaaaaagcaattctcagatatcaggatgaa
aacggaaatcttgtagaattaaaaggaccgaatgaaataggcgtcaaagtaacaagcctt
ctcaatttaagcgccgaacaattcagcaagattattctgcttcctcaaggaaagtttaaa
gagtttctgatgtcggacagcaataaaaaagagaagattctcaatcaaatttttggaacc
gatttttatgacgattgggtttcggaaatcaaaaaacaagcagacgaatcccgatcagac
agcgatgaaaccaaaaaagagctgttatttgaacaaaaacaggcaatcttttcggaagcg
gaaccggaagcagaaccgtttgaagattggttcgatgcattggatctgcaaataaaaagc
gatgaggaaaattgcgccaaagccaaagaggctgaagaagaaatgcaaaaaaaagtcaat
gaagcattgaagaagacggcgttggcagaacggctcgagcaagattttcaagaatttgag
gaagtttctcgaaaaaaagaactgttggaacgagaacaggcaaaaatcaacgagcagacg
aattatttggcagaattgaactgggcttttggatgcgaaacgatggttttcagaaaaaag
acgtctcaaaaacgcttggaagaactccgagcagacattgaaaaacaaaatgccgaattt
tctgaaacgaaggaaaaattcagcaaagcattggaaaccaagcaaattcttttgcggaaa
gctccccaaaaagacaaggcgcaagctgattttaatctgtggcaaggaagggtcggcata
tatgacgaggccgagcaaaaaaatgccgaacttgctgacctgcaagctcaggcagacaaa
tcatccaaaaagcttgccgaaaaaaaagcggaacttgaacgcaaaattgcctctaagaac
gctttggacaagtttatcgagaaaaattccggagcggacgacgaaaagcactgtcttgaa
ctggaaattcagcagctgaaagaaaatgaaaaaaaacttcaggattacaaagcccaacaa
caaaaagctcaagttttgaagaatgagcaggttgttttggaaaaagaatctgctgaagca
tcggaacttcaaaaaacggctgagcaggagtatgagaacatccagagtcaatgggccaag
ctgcagatcaacgaattggccaagctgctcaaaccgggagatgcttgcccggtttgcggc
agtttggagcatccgagccctgcatttggcgatgaaaagaccgtttacgtgacggaaaat
caagtaaaaaaagcaaaagaaaaacatgacgaagccgttgccgatgcttcagagaaaaaa
gccaaggcagatgccaaatcaaaagagttcagcgaacgtcaagctgactttttggagaag
ataactgagttcagtcaatctctcggatatgataccattgaaatcagcgagcttgaaaaa
aaactcgacaacaagagatcggataacgaagaaaaactctcacaagccagagaaacggca
cgaaaaagaactgaagccgaagtgaagcttaaaactttgcagacggaaattgaacgagga
gaagagcttgtttccgacttgaaacaagaactcagcgaatgtcaggcgacgatttcaggt
aaaaaggccggtctggcggaacttgaaaaacagttgccaaaacagttcaaaaccagaaaa
gagctgcaagaacaactgaatcagtgggatgagttcattaaaaaatatgatgccgacaag
gaaaacaacgataaagaagtttctgatcttgataaaaggcgtgcctcgttgcagtcgctg
atcgaaaaggaaaatatcaacctgggtaatgagtcaaatctatttcatgcttccgaaaaa
gaaatcgagtcggcttgcctgaagaaggggatttccgctgagagactttacgaattgctt
gcagaaaaagaccggattgccgagattgagcgtgaaatcagcgactttcagaaaaaagaa
gcaacggtttcgggcgaatatgctgcaagtcaaaagaaaatcgacgggaagattcggcca
aacatcgaagaaatgaagcagattcaacgagatgaacaggagcgccacagacgtgccaaa
gaatttttgcagcaatcagacaatttgctgaacaagaacaaggaatgtcgccgaaaggcc
gaaaaagtctggaaaaacagcaaggaaaaacttgaacttgccgagcgcaaacagtctttg
tataacgttctccgtggtcaaaagggcattgctccaggtttttcacgctttgttctggca
aattatttcagaagcgtaattgaagtcgcaaacgttcaccttgataagctgacgggcggc
agatataatctggttttggatgacacagcaaaggcaaacttaaaaaatatgggcctggaa
cttgacgtttatgacgacaatgccggcgtaaaccgtccagttcacacgctttccggcggc
gaaagttttattttctctctttcgcttgccatggcattgggagaagtcattcaggaaaga
aacggcggcatcagcattgaagcaatgtttatcgacgaagggttcggcacgcttgacgat
gaaaggctgcaatcagttctcagtgccttgcagtctttggaaaacaataatcgaatgatc
ggcattatcagtcatgttgacaaatttaaagagcaaattcctgctcagattcaggtaact
tcaaaagaaggcatcagcacgattggatatcagaccgaattctaa
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