Ligilactobacillus ruminis: LRC_04260
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Entry
LRC_04260 CDS
T01626
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03420
Nucleotide excision repair
lrm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRC_04260
03430 Mismatch repair
LRC_04260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_04260
Enzymes [BR:
lrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRC_04260
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRC_04260
MMR (mismatch excision repair)
Other MMR factors
LRC_04260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
UvrD-helicase
UvrD_C
Viral_helicase1
UvrD_C_2
AAA_30
NACHT
DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEN77741
UniProt:
G2SRS6
LinkDB
All DBs
Position
complement(464437..466716)
Genome browser
AA seq
759 aa
AA seq
DB search
MDSEKKKEQQRVDYVIGRIKEKIETTENELEKARKETSSVEKNYVQNAKINTFEVDDRME
TNAEVQQQKQLVAKNVENERILKQELSKLTLLKDSPYFGRIDILDQGEEEPESLYIGTAS
FAENNRNFLVYDWRAPISSIFYNGTLGNVQYETPMGIQTTELVKKRQFTIVDGKIRHMFD
TNETIGDEMLQAVLGEHSDEYMKNIVATIQKEQNDIIRDTKHDLLLVQGVAGSGKTSAIL
QRIAFLLYHSNRKLSADQIVLFSPNLLFSHYISEVLPSLGERNMRQVTLAEFFSRRFQGL
NVETIFARYEKSPLLTQKQLAVRQIKESAEFMQKIFAYAKKLDAKDLKFADMTLPDGQVI
FSAKEIKEIFAKLPTAMKQKDKFLEIKNALIKRLNRLIKTTARSRKMRAAIDLLSDEEYN
DLIGKKRRNHFQSLDQEVFYIGEKIAERKFAQIYDGLYNGFFFDVYAQYQDFLTRTLPDS
SHEFSENVEFHRISLSDCAPVLYLRDLLTGGGKNRSIEHLFIDEMQDYSMATMIYLKHAF
PNAKLTLLGDSEQALFNPLEEPKSLLQRLNESLQIKNCRIIELNTSYRSTKQITDFMKSL
LPNKGKIRSFARSGAKPTLFMTSRENALKDLKTTLKNAFDQNGTVALITKNERDAEELFF
KLKEDFDVTLLDDQDVSVPSGITILPIYLAKGLEFDSVIVCDVTEEKFPEDTLGIFYTIC
SRAMHSLTLICPEQMPEMLRQIPPELYTVSFSFEKNAES
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
ttggattccgaaaagaaaaaagagcagcagcgcgtcgattacgttatcggccgcatcaag
gaaaaaatcgaaactacggaaaacgagcttgaaaaagcacgcaaagaaacgtcttccgtt
gaaaaaaactacgtgcaaaatgccaaaatcaatacgtttgaagtcgatgatcgcatggaa
acaaacgcagaggttcagcagcaaaagcagcttgttgcaaaaaacgtcgaaaatgagcgc
attttaaaacaggaactttcaaagctcactcttttgaaagattccccttacttcggtcgc
atcgacatccttgaccaaggcgaagaagaacccgaatcgctttacatcggaacggcttct
tttgcggaaaacaatcgcaattttctcgtctatgactggcgtgctccgatttcttcgatt
ttttacaacggcacgctcggaaacgttcagtatgaaacgccaatggggatacagacaacc
gaactcgtcaaaaaaagacagttcacgatcgtcgacggcaaaatcagacacatgtttgat
accaacgaaaccatcggcgacgaaatgctgcaggccgttttaggcgaacacagcgatgaa
tacatgaaaaacatcgttgccaccatccaaaaagaacaaaacgacatcatccgggatacg
aaacatgacctgctgttggtccaaggcgttgccggaagcggcaaaacttccgctattttg
cagcgcatcgcctttttgctttaccacagcaaccgcaaactttctgcagaccaaattgtt
ttattttcgccgaacctgttgttttcacattatatttcagaagttttgccaagtcttggc
gaacgcaacatgcggcaggtcacgcttgctgaatttttcagtcgcagattccagggcctg
aacgtcgaaacgatttttgcccgctatgaaaaaagtccgttactgacgcaaaaacagctt
gccgtgcgacaaatcaaggaatctgccgaattcatgcaaaaaatcttcgcttacgcaaaa
aaactagacgcaaaagatttaaaatttgccgatatgactcttcctgacggacaggtcatc
ttctccgcaaaggagatcaaagaaatttttgccaagcttccaactgccatgaaacaaaaa
gacaagttccttgaaatcaaaaatgctttgatcaagcgcctgaacagactcatcaaaacc
accgcgcggtcaaggaaaatgcgcgcagcaatcgatcttctctcagatgaggagtataac
gatctgatcggaaagaaacgcagaaatcattttcaaagtctcgatcaggaagtattttac
atcggtgaaaaaattgccgaaagaaagtttgcccaaatctatgacggactttacaacggc
ttcttttttgacgtttatgcacagtatcaagactttttaacccgcacgcttcccgattca
tcgcatgaattttccgagaacgttgaatttcacagaatctctttaagcgactgcgcaccg
gtgctttacttgcgcgatctgttgaccggaggaggaaaaaatcgttcgatcgaacacctc
tttattgatgagatgcaggattactcaatggcaaccatgatttacctgaaacacgccttt
ccgaatgccaaactcacgcttctgggtgacagcgaacaagctctcttcaatccgcttgaa
gagccgaaatcactgcttcaaaggctaaacgagagccttcaaatcaaaaactgtcgcatc
atcgaactgaacaccagctatcgttcgaccaagcaaattaccgacttcatgaaatcgctt
cttccaaacaaaggcaaaattcgctcgtttgcccgttcaggcgctaaaccgacactattc
atgaccagccgagaaaatgcactcaaagatttgaaaacaacgcttaaaaacgcatttgat
caaaacgggacggttgccctgatcacaaaaaacgaacgggatgcagaagaacttttcttc
aagcttaaagaagattttgacgtcacgcttttagacgatcaggacgtttccgtcccctca
ggcataacgattcttccaatctatcttgccaagggcctcgaatttgattcagtcatcgtt
tgcgacgttacagaagaaaaatttcctgaagacacgcttggcatcttctatactatctgt
tcgcgcgccatgcattcattgactttgatctgcccggaacagatgcctgaaatgctcaga
caaattccgcctgagctttatactgtttcgttcagctttgaaaaaaatgcagaatcataa
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