Ligilactobacillus ruminis: LRC_04780
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Entry
LRC_04780 CDS
T01626
Symbol
rpoE
Name
(GenBank) DNA-directed RNA polymerase subunit delta
KO
K03048
DNA-directed RNA polymerase subunit delta
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LRC_04780 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrm03021
]
LRC_04780 (rpoE)
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_04780 (rpoE)
Transcription machinery [BR:
lrm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LRC_04780 (rpoE)
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LRC_04780 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARE-HTH
Motif
Other DBs
NCBI-ProteinID:
AEN77786
UniProt:
G2SLT9
LinkDB
All DBs
Position
517187..517774
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AA seq
195 aa
AA seq
DB search
MELEKFKDADRNELSMIEVAHAILNEHGKEMVFADLVNEIQTFLGKSDQEIRDRLPQFYM
DLNFDGSFISLGENTWGLRSWYPYESIDEALVHTDDEDDEDRPRKKSKKVNAFLDDDADD
DDVIDYNDDDPEDNDLDDDYDDEDDEDENRELKEYSRDLDDIDDADDTEDDLPDGIEGQL
NELDDDEDSDGDDEL
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
gtggaactagaaaagttcaaagatgccgacagaaacgaattgtccatgattgaggttgct
cacgcaattcttaatgaacatggcaaagaaatggtatttgctgatttggtcaatgagatt
caaacgtttttgggtaaaagcgatcaggaaattcgtgatcgtttgcctcaattttatatg
gatctcaattttgacggcagcttcatctcattaggcgaaaatacgtggggacttcgttca
tggtatccatacgaatcgattgacgaagcgcttgttcacaccgatgatgaagacgatgaa
gatcgtccgcgcaaaaagagcaagaaggtcaacgctttcttggacgatgatgctgacgat
gatgacgtgatcgattacaatgatgacgatcctgaagacaacgaccttgacgatgattat
gacgatgaagatgatgaagacgaaaatcgtgaattgaaggaatacagtcgagatcttgac
gatatcgatgatgcagacgatactgaagacgatcttccggacggcatcgaaggtcagctg
aacgagttggatgatgacgaagattccgatggtgacgacgaattataa
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