Ligilactobacillus ruminis: LRC_04830
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Entry
LRC_04830 CDS
T01626
Symbol
rho
Name
(GenBank) Transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRC_04830 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrm03021
]
LRC_04830 (rho)
03019 Messenger RNA biogenesis [BR:
lrm03019
]
LRC_04830 (rho)
Transcription machinery [BR:
lrm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LRC_04830 (rho)
Messenger RNA biogenesis [BR:
lrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LRC_04830 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
Spore_III_AA
AAA_25
CSD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEN77790
UniProt:
G2SLU3
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All DBs
Position
523047..524366
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AA seq
439 aa
AA seq
DB search
MSKKNLTLEDLQKKTLKEIYEYAREYKIKYYSQMNKKELSLAVIRAQAEQDDFRMKGILE
IFYDDGGYGFLRPLNYSPSKEDIYLSASQIKRFGLRNGDEVAGRVRPPRKGSNNDRYGMM
YIDAVNGKDPDEAKGRPHFPALTAIYPDRKLVLENNPKDLSTRLIDLFAPVGFGQRGMIV
APPKAGKTTFLKNIAAGISKNAKDAKLIVLLIDERPEEVTDLEDYVSSINSNGEVVYSTF
DQRPESHVHISEMVLERAMRLVEDKQDVVILLDSLTRLARAYNLVIPSSGKTLSGGLDPT
ALYRPKKFFGSARNVREGGSLTIIATALVETGSRQDDIIFEEFKGTGNQELQLNRDLAER
RIFPAVDIKKSGTRKEELLLTKEELEAVWKLRRISTSDTVRFTNDILKVFKQTKDNAEFC
QKVEDLSKTTRSSKKIGKR
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaaaaaatttgacacttgaagatcttcaaaagaagacgctgaaagaaatttac
gagtatgcgcgtgaatacaagatcaaatactatagtcagatgaacaaaaaggaattgtct
ttggctgtcatccgggcgcaggccgaacaagacgatttcaggatgaaaggaattcttgaa
attttttacgatgacggcggctatggttttttgagaccgctcaattacagtccttcaaaa
gaagacatctatttgtcggcatctcaaatcaagcgttttggtctgagaaacggtgatgag
gtggccggaagagtcagaccgccgcgtaaaggctccaataacgatcgttacggcatgatg
tatattgatgcggtcaacggaaaagatccggatgaagccaagggaagacctcattttcct
gctttgacggcaatttatcctgataggaaactagtccttgaaaataatcccaaagatttg
tcgacacgcttgattgatctctttgcaccggtcggatttggtcaaagaggcatgattgtt
gcgcctcctaaggccggaaagactacttttttgaagaatattgcagccggaatttcaaag
aatgcaaaagatgcgaaactgatcgttcttctaattgatgagcgtcccgaagaagtcacc
gatttggaagattacgtttcatcaatcaattcgaacggtgaagtcgtttattcgaccttt
gatcagagaccggaaagtcatgtccacatttcagaaatggttcttgagcgtgcgatgcga
ttggtcgaggataagcaggatgtcgtgattttgcttgattcgttgaccagacttgcgcgc
gcatacaatctcgtgattccttcaagcggcaaaaccctgtccggtggtctggatccgacg
gctttgtaccgtccgaagaaattttttggatcggcacgaaacgtccgtgaaggcggaagt
ctgacgattattgcgactgctttggttgaaacgggcagcaggcaggatgacatcatattt
gaggaatttaaagggaccggcaatcaagaactccaattgaatcgtgatttggcagaacgc
cgaatttttcctgctgttgacatcaagaagtcgggcacgagaaaagaagaacttttgttg
accaaagaagagcttgaagcagtttggaagcttcgcagaatttcaacaagcgataccgtt
cgtttcacgaatgatattttaaaagtcttcaagcagacgaaagacaatgctgaattttgc
caaaaggtcgaagatttgtcgaaaacgacgcggtcaagcaaaaaaatcggaaaaagataa
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