Ligilactobacillus ruminis: LRC_05020
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Entry
LRC_05020 CDS
T01626
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03420
Nucleotide excision repair
lrm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRC_05020 (pcrA)
03430 Mismatch repair
LRC_05020 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_05020 (pcrA)
Enzymes [BR:
lrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRC_05020 (pcrA)
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRC_05020 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
LRC_05020 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_11
ResIII
APAF1_C
GpA_ATPase
FWWh
Motif
Other DBs
NCBI-ProteinID:
AEN77806
UniProt:
G2SLV9
LinkDB
All DBs
Position
544988..547258
Genome browser
AA seq
756 aa
AA seq
DB search
MIDYFQRGLNNLTQNDLLNGMNDKQREAVVCTEGPLLIMAGAGSGKTRVLTHRVAYLIEH
QNVNPWNILAITFTNKAAREMRERIDRLVEYGSEAVGVSTFHALCVRILRRDAEKVGFSK
AFTIGSPSEQKTLMKHIVADTLNLDTKQYDPRSFLASISSWKNELIEPEEALLQANAEAN
PMEVAAARAYQIYQDELKKNQTMDFDDLIMKTIQLFESSPETLEFYQRKFRYIHVDEYQD
TNEAQYRLVNMLAQGFRNLCVVGDADQSIYGWRGANMENILNFEKDYKDATVIKLEQNYR
STKTILQAANEVIEHNLNRKDKTLWTENESGDKITYYRADNAAAEGYFVIKSIQKEIREK
HRSYNDFAILYRTNAQSRTLEETFVKANIPYKLVGAHRFYDRKEIMDILAYLRLVANPDD
SMSFARVVNEPKRGIGATSITKLQNFADMHGISLYEAGKSVDLTGIPVRTAKKITEFCDM
LKLFHQVQKKATITEMTEQILSITGYQKALNDANTLEAKGRLENLEEFLSVTKEFDENWD
PEDEESDPFTDFLADLALVSDQDGVDQNDDVVTLMTLHAAKGLEFPVVFLIGMEEGIFPL
GRAAMNESDLEEERRLAYVGITRAEEKLYLTNALSRMLYGRTQQNTASRFIGEISDALLE
SANETVKNSSYPFSSGPVATEKVEKPRKRPGTIERPAQTGAENVGWKIGDKVEHKAFGLG
TVVKVNGSGENAELDVAFSGNGIKRLLAAFAPIRKV
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgattgattactttcagaggggattgaacaacttgacgcaaaatgacttattgaacgga
atgaatgataagcaaagagaagccgttgtttgtacggaaggaccgcttttgatcatggcc
ggtgccggaagcggcaagacgcgcgttttgacgcaccgcgtagcctaccttatcgagcat
caaaatgtcaatccgtggaatattttggcgatcacgtttacgaacaaggctgcacgcgaa
atgcgtgaacgtatcgacaggctggtcgaatacggttcagaagccgttggggtttcgacg
tttcatgctttgtgcgtgagaattttgcgtcgcgatgccgagaaagtcggattttcaaag
gcatttacgatcggcagtccgagcgagcaaaaaactttaatgaaacacatcgttgccgat
acgctgaatcttgacacgaaacaatacgatccgcgcagctttctcgcctcaatttcttcc
tggaagaatgaactgatcgaaccagaagaagcgcttttgcaggcaaatgcagaggcgaat
cccatggaagttgccgccgcacgtgcttatcagatatatcaggacgaattgaagaaaaat
cagacgatggactttgatgatctgatcatgaagacgatccagctgtttgaaagttcgcct
gaaacgctcgaattctatcagcgcaaattccgttacattcatgtcgacgaatatcaggat
acgaacgaagcgcaatatcgtctggtcaacatgttggcgcaggggtttcgcaacctttgc
gtcgtcggtgatgccgatcagagcatctacggatggcgcggtgccaacatggaaaacatc
ttgaactttgaaaaagactacaaggatgccaccgtcatcaaacttgaacaaaactaccgc
tcgacgaaaacgattctgcaggctgcaaacgaagtgatcgagcataatctcaatcgcaag
gacaagacgctttggaccgaaaacgaatccggtgacaaaattacctactatcgggccgac
aatgcggctgccgaaggctatttcgtcatcaagagcattcaaaaagagatcagggaaaaa
catcgcagctataatgactttgcgattttgtaccgcacgaatgcgcagtcgcgtacgctt
gaagaaacatttgtcaaggcaaacatcccctacaagctggtcggtgcccatcgtttctac
gatcgcaaggaaatcatggatattttggcctacctgcgtctggttgccaatccggacgat
tcgatgtcgtttgcgcgcgtcgtcaatgagccgaagcgcggaatcggcgcaacttcgatc
acgaagctgcaaaattttgccgacatgcatggcatttcattgtacgaagcgggcaagagt
gttgatctgacggggattcccgtgcggaccgcgaagaagatcacggaattttgcgatatg
ctgaaattattccatcaggttcaaaagaaagccacgattactgaaatgacggaacagatt
ctgtcgatcacaggctatcaaaaagcattgaacgatgccaatacgcttgaagcaaaaggt
cgtttggaaaacttggaagaatttttgtcagtgacgaaagaatttgacgaaaactgggat
ccggaagacgaagaaagcgatccgtttacggactttctggccgatttggcgcttgtttcc
gatcaggacggcgttgaccagaatgatgacgtcgtcacgctgatgacgcttcatgcggct
aaaggtctggaatttccggtcgtttttctgattggaatggaagaaggcatcttcccgctc
ggaagagcagccatgaatgaatcagatctagaagaagaacgacgccttgcttacgtcggg
attacgcgtgccgaagaaaaactgtatctgacaaatgcgctgtcgcggatgctttacggc
agaacgcagcaaaataccgcctcgcgctttatcggcgaaatctcggatgcgctgctggaa
tcggccaacgaaaccgtcaagaactcaagctatccgttttcaagtggtcccgttgcgact
gaaaaagtcgaaaagccaaggaagagaccggggacaatcgaacgaccggcacagaccggt
gccgaaaacgtcggctggaaaatcggcgacaaggtcgagcacaaggcattcggactcgga
acggtcgtcaaagtcaatggttccggagaaaatgcagagcttgacgtcgccttttccggc
aatggcatcaagcgtctgttagctgcttttgcaccgatcaggaaagtttag
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