Ligilactobacillus ruminis: LRC_06260
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Entry
LRC_06260 CDS
T01626
Symbol
uvrB
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRC_06260 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_06260 (uvrB)
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRC_06260 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LRC_06260 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_19
T2SSE
DUF2963
AAA_7
AAA_5
AAA
LAGLIDADG_3
AAA_22
UvrD-helicase
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEN77922
UniProt:
G2SMM4
LinkDB
All DBs
Position
674531..676528
Genome browser
AA seq
665 aa
AA seq
DB search
MIERQPDRNFELCSSYKPTGDQPEAIAELTAGIKAGEHAQILLGATGTGKTFTISNVIAN
VNKPTLVLAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
NDEIDKLRHAATSALLERNDVIVVASVSCIFGLGDPSEYQQQALSLHVDQEYGRDRLLRE
LVEIQFERNDIDFQRGRFRVRGDVVDIFPASSDSSALRIEFFGDDIDRICEFNPLTGEII
TDTDKVTIFPATHFLTNDDRMKQALEGIEKELKERLEELRAQGKLLEAQRLEQRTTYDIE
MMREMGYCSGIENYSKYMDNRQMNRPFTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDQA
RKQMLVDYGFRLKSALDNRPLKLEEFEKLTNQIIYMSATPGDYEKKQTDHIVQQIIRPTG
LLDPEIEVRPIMGQMDDLVGEINKRTEKNERVFVTTLTKKMAEDLTDYLKELGIKVKYLH
SDIKTLERTRIVRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQ
TIGRAARNANGHVIMYADEVTESMKAAIDETRRRREIQMRYNQERGIVPQTIKKEIRAAI
SYGDKVSKKSKKKTEDFDFNDLSQKDQQEMISGLEEQMREAAKKLDFEEAARLRDTVLEL
KAEIE
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
gtgattgaacgacaacctgatcgaaattttgaattatgctcgtcttacaaaccaactggt
gatcagccagaggcaattgctgaacttactgccggaatcaaagccggggaacatgcgcaa
attttattgggcgcgaccggaaccggcaaaacgtttacgatttcaaacgtcattgcaaac
gtgaataagccgaccttggttttggcacataacaaaactttggcaggtcagctttatggc
gaattcaaagagttttttccaaataacgcggtcgaatatttcgtatcatattacgactat
tatcagcctgaagcctatgttccttcgagcgatacctacatcgaaaaagattccagcatc
aatgatgagatcgataagctaagacacgctgcgacaagcgcgttgcttgaacgaaacgac
gtcattgtcgtggcttcggtctcgtgcatttttggattgggcgatccaagcgaatatcag
caacaggcgctttctttgcacgttgatcaggagtatggccgcgatcgcctgctcagggaa
ttggttgaaatccagttcgagcgaaacgacattgattttcagcgcggccgtttccgcgtt
cgtggtgacgtggtcgatatttttccggcgtcaagcgattcgtcagcgctcagaatcgag
ttttttggagacgacattgatcgaatctgcgaatttaacccactgaccggtgaaattatc
accgatacggataaggtgacgatttttccggcaacgcactttttgacaaatgacgatcga
atgaaacaagcattggaaggaatcgaaaaagagctgaaagaacgacttgaggaactgcgc
gcgcaaggcaagcttcttgaagcccagcgccttgagcaaagaacgacgtatgacatcgaa
atgatgcgtgaaatgggctattgttcaggaatcgagaattattcaaaatatatggataat
cgtcagatgaacagaccgtttacgctgcttgacttctttccgaaagatttcttgctcgtt
gtcgatgaatcgcatgtgacgatgccgcaggtcagggggatgtataacggtgaccaggct
cgcaagcaaatgctggtcgattatgggttcagacttaaaagcgcacttgacaatcgtccg
ttgaagcttgaagaatttgaaaagctgacgaatcaaattatttatatgtcggcaactcca
ggagattacgaaaagaaacagaccgaccacatcgttcaacagataattcgaccgaccgga
ctccttgatcctgaaatcgaagtcagaccgatcatgggacagatggatgaccttgtcggt
gaaatcaataagcgtacggagaaaaacgagcgagtcttcgtgacgactctgacgaaaaag
atggccgaagatttgacagattatctgaaagaactcggcataaaggtcaaatatctgcat
tctgatatcaaaacgcttgagcgaacaagaatcgttcgagatctgcgtcttggcaaattt
gacgttttggtcggaatcaacctgcttcgcgaaggaatcgacgttcctgaagtatcgttg
gtagcaattcttgatgccgataaggaaggattccttagaaatgagcgttccttgattcaa
acaatcggacgtgctgccagaaatgccaacggacacgtgatcatgtatgctgacgaagtg
accgaatcaatgaaagctgcgattgacgaaaccaggcgtcgtcgcgagattcagatgagg
tataatcaagaacgcgggatcgttccgcagacaatcaaaaaagaaattcgtgctgcaatt
tcatatggagataaagtttccaagaagtctaaaaagaaaacggaagactttgatttcaac
gatttgagccaaaaagaccaacaagagatgatttcagggttggaagaacagatgagagaa
gcagccaaaaagcttgattttgaagaagctgcacgtttgcgagacacggttcttgaactt
aaggcggaaattgaatag
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