Ligilactobacillus ruminis: LRC_10040
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Entry
LRC_10040 CDS
T01626
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
lrm
Ligilactobacillus ruminis
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lrm03016
]
LRC_10040 (truB)
Enzymes [BR:
lrm01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
LRC_10040 (truB)
Transfer RNA biogenesis [BR:
lrm03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LRC_10040 (truB)
Prokaryotic type
LRC_10040 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
AEN78280
UniProt:
G2SNW7
LinkDB
All DBs
Position
complement(1050526..1051443)
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AA seq
305 aa
AA seq
DB search
MDGILPLNKDRGMTSNDAVFKCRRLFRTRKVGHSGTLDPNVDGVLPICIGHATKVVSYLM
ESGKVYTGEVTLGFSTETEDLDGEIVEEYFLTKPFSDELIKEKMQQLCGDIIQIPPMYSA
VKVNGRRLYDYARKGEKVERPKRKIHVGSFELVGSSAFDKEKGVQKLRFKVACGKGTYVR
TLATDLGKKLGVPAVMSDLTRLESGSFKLDEAYTLAQLEELKQNGRLEEALRPVDHALKM
PKRELTSAQWKIVKNGGFLLPENFSDLSATDGLQVALTYQNKCRCVYRYNEEKRRYQAEQ
MIDLT
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggatggaattttacccctgaacaaagatcgcggcatgaccagcaatgatgccgtgttt
aaatgcagacgcctgtttcggaccagaaaagtcggacacagcgggacgctcgatccaaac
gttgacggcgtgctgccaatctgcatcggacatgcgacaaaagtcgtcagctatctgatg
gaatcaggcaaagtttataccggtgaggtcacgcttggattttcaacggaaacggaagat
cttgacggggaaatcgttgaagagtattttttgacgaagcctttttcagatgaattgatc
aaggaaaagatgcagcagctttgcggagacatcattcagattcctccgatgtattctgcc
gtcaaggtcaacggcagacgtttgtacgattacgccagaaaaggcgaaaaagtcgaacgt
cccaagagaaagattcacgttggaagttttgaattggtcggaagctctgcatttgacaaa
gaaaaaggcgtccaaaaattgcgtttcaaagtcgcctgcggaaaaggaacctatgtcaga
acgcttgccacggatctcggcaaaaaacttggcgttccggccgtcatgagcgatctgacg
cgacttgaaagcggcagtttcaagcttgacgaagcctatacgctggcacagcttgaagaa
ctcaagcaaaacggcaggctggaagaggccttgcgcccggtcgaccatgctttgaaaatg
cctaaaagagaactgacgagtgcgcagtggaaaatcgtcaagaacggcggctttttgttg
cctgaaaatttcagtgacttaagcgcaacggatggccttcaggtcgctttgacgtatcaa
aacaagtgtcgctgcgtctatcgatataatgaagaaaagagacgctatcaggcagaacag
atgattgatctgacatag
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