Ligilactobacillus ruminis: LRC_10350
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Entry
LRC_10350 CDS
T01626
Symbol
polC
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03030
DNA replication
lrm03430
Mismatch repair
lrm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LRC_10350 (polC)
03430 Mismatch repair
LRC_10350 (polC)
03440 Homologous recombination
LRC_10350 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrm03032
]
LRC_10350 (polC)
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_10350 (polC)
Enzymes [BR:
lrm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LRC_10350 (polC)
DNA replication proteins [BR:
lrm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LRC_10350 (polC)
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LRC_10350 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
AEN78306
UniProt:
G2SNZ3
LinkDB
All DBs
Position
complement(1083524..1086886)
Genome browser
AA seq
1120 aa
AA seq
DB search
MFAPLQVKSAYSLLQSPLKISDYVEAASKMGYEALCLTDVDVLYGAFEFFEACRKYGIKK
PVIGIELNMQGDGEEEPISLLLLAKNAAGYRNLVKISSNKLSENSLDPHDNPQTCDDIKD
CLDGVAVIVSPESIKVASSPKFLKKLQSNGAKLYLGKGPQFSRELLLDAYRIAETLKIPQ
IALSKVEYLKPDDYFGQVVLQAIDADERINFDQRMSGSEYLKSPNEYQIDYKNAGMETEF
GQTEKLLSEIDFWLTPSEISLPHYKFQKGVVKVSSHDYLKRLCADGIKRCFRENPDKIDI
YQKRLDYELKVIHEMGFEDYFLIVSGITQYARSVGIIVGPGRGSAAGSLVSYVLRITDVD
PIKYNLLFERFLNEERHEMPDIDLDIPDNKRDRIIKYVYDTYGSRHMAQIITFDTFGAKQ
ALRDVCRIFGLTQAETEAWSKAIPFGDKMTLERARRESQRIRNLIADSKRNERLFETAQK
LEGLPRHFSTHAAGIVLSDQNLDEVVPVQIGNDGYLMTQFSKKPVEKAGLLKIDLLGLKN
LRILNTAKNLVNQNVASKLDLEQIPLDDKETLELFYNAKTEGIFQFDSYGIRQAMLKIRP
ENFEDIVALNALYRPGPIRNIDEFTARRHGRKNVSYPAKVLEPILNSTYGIIVYQEQAMQ
VSSKMGGFTLGEADILRQAISKKEHETIERMRVKFVAGAQKKGFSKEDALRVYDYIERFG
EYGFNRSHAVAYSKMAFQMAYLKAHYPAEFYCALLSTVIGNVEKTQSFLVAAKKRKIKIL
APDINKSSYDFRISDGGIMFGFLSVKGIRFDFIRQILAERHAGGYRPFKSLDDFMNRMVD
RALVDKQDHDGDAKEREKIAKSYRPIVETLIYVGAFDSLGADRSQLLNRLDVLVKYDQLS
MSVPLLESLFVPSKKNVKKLTLDERLEKEKEHLGVYLSAHPLDKYSAFAQGIGASSLASL
VPDQQAIVLVRIKEIKKIKTKKGDEMAFVSCIDQTGEMEATFFPKQFLRYHKGLKGNAEL
LFYGRVQERNGLSFVVDRVEPIEYIALHFPNTITIETKRQLFAIMKRYLGPIPVIVEDEA
KQTKKMLDRRFWLKKDQKMLEEIGELLNRENIRHVKGNPG
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcaccgcttcaagtaaaaagcgcatatagtctgttgcaaagcccgcttaagatc
agcgattacgtcgaagccgcaagcaagatgggatatgaggcactttgcctgaccgacgtc
gacgttctttatggcgcgtttgaattttttgaagcatgtcgtaaatacggaataaaaaaa
ccggtaatcggaattgagcttaatatgcaaggagacggtgaagaagaaccgatttctttg
cttttgcttgccaaaaatgcagcagggtatcgaaatttagtgaaaatttcatcaaacaaa
ctgtctgaaaacagccttgatccgcatgacaacccgcaaacgtgcgatgacataaaagat
tgtcttgacggggtggcggtgattgtttcgcccgagtcgatcaaggttgcaagctcgccg
aagtttcttaaaaagctgcagtcaaacggtgcaaaactgtatctgggcaaaggacctcaa
ttttcgcgcgaacttttgcttgatgcgtatcggatcgcagaaactttgaagattccgcaa
atcgccttgtcaaaagtcgaatatctgaagccggatgattattttggacaagtggttctc
caggcgattgatgcggatgaaagaatcaattttgatcagcgtatgtccggttctgaatat
ctgaagtcaccgaatgaatatcaaatcgattataaaaatgcagggatggaaaccgaattt
ggccaaactgagaaacttctttccgaaatcgacttttggctgactccatctgaaatctcg
ttgccgcattacaaatttcaaaagggcgttgtaaaagtttcatcacatgattatttgaaa
cggctgtgcgctgacggaatcaagcgctgtttcagagagaatcctgataagatcgacatt
tatcaaaagcgtcttgattacgagcttaaagtgattcatgagatgggattcgaagactat
ttcttgattgtcagcgggattacgcaatatgcgcgctcagtcggtatcatcgttggaccc
ggacgcggatctgccgccggatcgctggtatcttatgtcttgcgcattaccgatgtggat
ccgattaagtataatcttttatttgagcgtttcttaaatgaagaacgtcacgaaatgcct
gatatcgacctggatattcctgacaataagcgtgatcggatcatcaagtatgtttatgat
acgtacggaagtcgacacatggcacaaattattacgtttgacacatttggtgccaagcag
gccttgcgcgacgtatgccgcatattcgggctgactcaggccgagactgaggcttggtca
aaggcgatacctttcggggataaaatgacgcttgagcgtgctcggagggaatctcagcga
atcagaaatttgatcgcggacagcaaaagaaacgagcgcctgtttgaaactgcgcaaaag
cttgaagggttgcccagacatttttcgacgcatgctgccggaatcgttttaagcgatcaa
aatcttgacgaagtcgttccggttcaaatcggaaatgacggttatttgatgacccagttt
tcaaaaaaaccggttgaaaaagcaggtttgctcaaaatcgaccttttaggtttgaaaaat
ttgcgaattttgaatacggcaaagaatcttgtcaaccaaaatgtagcatcaaagcttgat
cttgaacaaattccgctcgacgacaaagaaactttggaactcttttataatgccaaaacg
gaaggaatttttcaatttgattcatatggaatcagacaggccatgcttaaaatcagacct
gagaattttgaagacatcgttgctttgaatgccttgtatcgtccaggaccgattcgaaac
attgacgaatttacggcaagacgtcacggacgaaaaaatgtttcttatccggcaaaggtt
ttggaaccaattttaaatagcacttacggaattatcgtctatcaggagcaagccatgcag
gtttcgtcaaaaatgggtggtttcacattgggcgaagccgatattctgcgtcaggcaatc
agcaagaaggaacatgaaacgattgaaagaatgcgcgtcaaatttgtcgcaggtgctcaa
aaaaagggtttctcaaaagaagacgcattgcgagtttacgattacattgaacgatttgga
gaatacggcttcaatcgttcgcacgccgttgcgtattcgaagatggcttttcagatggct
taccttaaggcacattacccggcagaattttattgtgcgctgcttagtaccgtaatcggc
aacgttgagaagactcaaagctttttggtggctgccaagaagcgcaaaatcaagatcctt
gcgcccgacatcaataaaagcagttatgattttcgcatttctgacggtggcatcatgttt
ggctttctgtccgtgaagggaatcagattcgattttattcgacagattttggctgagcgc
catgctggcggataccgaccttttaaaagtctggatgatttcatgaacagaatggttgat
cgtgctcttgtcgataagcaagatcatgacggtgatgcaaaagaacgcgaaaaaatcgcc
aaaagctacagaccgatcgttgaaacgctgatttacgtcggagcgtttgattctttggga
gccgatcgaagtcaacttttgaacaggcttgacgttttggtgaagtacgatcagctttcg
atgagtgttcccttgcttgaatcgcttttcgtgcctagcaagaaaaacgtcaagaaactg
actctggatgagcggttggaaaaagaaaaggaacatcttggcgtatacctgtcagcgcat
ccgcttgacaaatacagtgcattcgcacaaggaatcggagcaagttcgcttgccagcctt
gttcccgatcagcaggcaatcgttcttgttagaattaaggaaattaagaagatcaagacc
aaaaaaggcgacgagatggcgtttgtttcatgcattgatcagacgggcgagatggaggca
acttttttccctaaacagtttctcagatatcataaaggattgaaaggaaatgccgagttg
ttgttttacggcagagttcaggaacgaaacggtctttctttcgtggttgatcgcgtcgag
ccgattgaatatattgcactgcattttccaaacacgatcacgatcgaaacgaaacgccag
ttgtttgccattatgaaacgatatttgggaccgataccggtcatcgtcgaagatgaagca
aaacagacgaagaagatgttggacagaagattttggctcaaaaaagatcaaaagatgctg
gaagaaatcggtgaactgctgaaccgagaaaacatccggcatgtcaaaggaaacccggga
tga
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integrated database retrieval system
