Ligilactobacillus ruminis: LRC_10420
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Entry
LRC_10420 CDS
T01626
Name
(GenBank) SNF2 family helicase
Organism
lrm
Ligilactobacillus ruminis
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SNF2_assoc
Helicase_C
ResIII
ERCC3_RAD25_C
SWI2_SNF2
SWIM
Motif
Other DBs
NCBI-ProteinID:
AEN78313
UniProt:
G2SP00
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All DBs
Position
complement(1094211..1097726)
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AA seq
1171 aa
AA seq
DB search
MNEWKNRFSSLTIQMAGSILRTMKEIPLVSVDDRNIFFTVVFSQNIKTTVTLTEERNDIE
QSTCQCGRRNCIHLAMLMTILEHKKLLGEDNSSESRNFDKSTFKWLRDWDEETYYYNLPK
LFSDLPFSEYDWNQALKKRDENAAWCHFEIKNGCFCMTMDKGWGITEIRFNREKIVSYDC
YSNPGDWCKHLTECCVMVAKDVLENNVNPEEETFGKDFVCMDLGGEKKTPTLKLYPEISK
KYTNDYDELSFRVGRIDEKKSFVVKDIKDFYEKLVAEDEYQITPNKSIFFDEESLNEQDE
ELIRFAYNEKIEEDYGRGYSRIESKALAMSPPRYDGLFDRTKTVKIDKNVYFKKDDEFDF
LFECKRDDKRNGYHFLYSFPSKMIEGSERIYYFNRNDFSMCGSSVTDTKRRLIRKLEKYC
AYPGERQDIFISDANKHELSDLIGKIEKLGMKVEGKPELSKDEAKKPEVSYYFDADKENF
FCKVECTYGGEHYPIELNDFGIIKGQKNRKRSEYFEKKAIEHLRGKFVFDEEAFVTERDT
ENTEMIFERLLPKLKKTGSVMGTRAFQNARIYRQPKFSVGLSFNNDLLNIEVTSSDFSPE
ELSEILGSYTPQKKFYVLKTGKRLKFDDEDKTFEELFKTMKMIGATPEEFVKGKLDLPLY
RAFYLESVLQEKERLTVSSDERIKSFVESFESFTEEQLPLPSGLNAKLRPYQEEGYRWMA
SLANGNFGGILADEMGLGKTLQTITLLLAAKDDKISQVGSGQALIVTPAALLYNWQNELE
NFAPTLKTLVINGTKKQRHDLLADVADYDIVLTTYDQLKRDFEDYLELEFEYEIIDEAQN
IKNSTTQASKAVKTIDAKTRFALTGTPIENRLSELWSIFDYVMPGYLFSYNEFREQFERP
IMIDEEKGMQKALIKMIVPFVLRRKKSQVLKDLPEKIERPYYAEMSKKQAGLYQAMVNEL
RTELSQKSADEFKQSKIEILAKLTKIRQICCDPSLVYSDYDGESGKTDTCMELIESALSG
GHRIIVFSQFVSMLSILEKKLKQRKIEFYKIVGETPKEERFKMVEEFNQNDVPIFLISLK
AGGTGLNLVGADVIIHYDPWWNEAAQNQATDRAHRIGQTKNVLVYKLIVKDTIEEKILKM
QEQKSKLADDILSGKGMQSGIIDKDDLMNLL
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaatggaagaacaggttttcttcgctgacgattcagatggctggcagtattttg
cgcacaatgaaagagattccgcttgtcagcgttgacgacagaaacatattttttacggtg
gttttcagtcaaaatatcaagacaaccgtcacgctgacggaagaaagaaacgacatcgaa
caatcgacttgccagtgcggtcgcaggaattgcattcacctggcgatgctgatgactatt
cttgagcataaaaaattgcttggagaggacaattcttctgaaagcaggaatttcgataaa
agcacgtttaaatggctgagagattgggatgaagaaacttattactacaatcttcccaag
ctcttttccgaccttccgttcagcgaatatgattggaaccaagcccttaaaaagcgtgat
gaaaatgctgcttggtgtcattttgaaatcaaaaacggctgtttttgcatgaccatggac
aaaggttggggaatcactgaaattcgtttcaaccgagaaaagatcgtcagttacgattgt
tatagcaatcctggcgattggtgcaaacatttgactgagtgctgcgtaatggttgcaaag
gatgttttggaaaacaacgtcaatcccgaagaagaaacgtttggcaaagatttcgtctgc
atggatcttggaggagaaaaaaagacgccgacgctgaaattgtatccggaaatctccaaa
aaatataccaatgattacgatgaattgtcattcagggtcggaagaatcgatgagaaaaaa
agttttgtcgttaaggacatcaaagatttttatgaaaagcttgtcgctgaagatgagtat
cagattacgcctaacaaatcgattttttttgatgaagaaagcttgaacgagcaggatgaa
gaactgatcaggttcgcatacaacgaaaaaatcgaagaggattacgggcgcggctattcc
aggattgaatcaaaggcgcttgcgatgtcgcctccaagatatgatggcttgttcgacagg
acaaaaacggtaaaaatcgataaaaacgtctattttaaaaaagatgacgaatttgatttt
ttgtttgaatgcaaaagagatgacaaaagaaacggctatcactttctttactcatttccg
tcgaagatgattgaagggtcagagcgaatctattattttaatcgcaacgatttttccatg
tgcggaagcagcgttaccgatacaaagagaagacttatcagaaaacttgaaaaatattgc
gcatatcccggagaaagacaggacatctttatcagtgatgcaaacaagcatgaattgagc
gatctgatcggaaaaatcgaaaaattgggaatgaaagtcgaaggaaagcctgaactttca
aaagatgaggcaaagaaaccagaagtttcctattatttcgatgctgataaggaaaatttc
ttctgcaaggtcgaatgcacgtacggtggtgagcactatccgatcgagctgaacgatttc
ggaataatcaaaggtcagaaaaatcgaaagcgcagcgaatattttgaaaaaaaggcaatc
gaacatttgcgcggcaagtttgtttttgatgaagaagctttcgtcacggaacgcgacacg
gaaaatactgagatgatttttgaaagattgcttccaaaactgaaaaaaacaggcagtgtc
atgggaacgagggcctttcaaaatgctcgcatttaccgccagcctaaatttagcgtcggt
ttgtcgtttaacaacgatttgctgaacattgaagtgaccagctctgatttttcgccggaa
gaactgtccgaaattttaggcagctatacgccccaaaagaaattctatgttcttaaaacg
gggaagaggctcaaatttgacgatgaagacaaaacgtttgaagaattatttaaaacgatg
aaaatgatcggtgcaacgcccgaagaatttgttaaaggcaagcttgatctgccgctttat
cgtgccttttatttggaatcagtgcttcaggaaaaagaaagattgaccgtttcttccgat
gagcgaatcaaaagctttgtagagagttttgaaagctttacggaagaacaactgcctctt
ccctcgggattgaacgccaaactgcgtccttatcaagaagagggctatcggtggatggct
tcgcttgcgaacggaaatttcggcggaatcctggccgatgaaatggggcttggcaagact
ttgcagacaatcactcttttgttggccgccaaagacgacaaaatcagtcaggtcggttcc
ggtcaggctttaatcgtgacaccggctgctttgctctacaactggcaaaacgagcttgaa
aactttgcgccgacgctcaagacattggtgatcaatggcactaaaaaacagcgtcacgat
ctgcttgcagacgttgccgactatgatatcgttttgaccacttatgatcagctcaagcgc
gactttgaagattatcttgagcttgaatttgaatacgaaatcattgatgaagctcaaaac
atcaaaaacagcacgacgcaggcttcgaaagcagtcaaaacgattgatgccaaaacgcgc
tttgctttgacgggaactccgatcgaaaatcgtttgagcgagctttggagcatttttgat
tacgtcatgccgggatatttgttcagctataatgaattcagagaacagtttgaacgtccg
atcatgatcgatgaagaaaaaggcatgcagaaggctttgatcaagatgattgtgccgttt
gtgctgcgccgaaaaaaaagccaggttctaaaagacttgccagagaagattgaacggcca
tattatgctgaaatgtctaaaaaacaggccggcttgtatcaggcaatggttaatgaattg
agaacggagctcagtcaaaaaagtgctgatgaattcaagcagtcaaagattgagattttg
gcgaaactgaccaaaattcgacagatttgttgcgacccaagtctggtctattctgattat
gacggagaatcgggcaaaacggacacctgcatggagctgatcgaatcggctctttccggg
ggacacagaattattgttttctcgcaatttgtttcgatgctttcgattcttgaaaagaaa
ctcaaacaaagaaagattgagttctataagattgtcggtgaaacacctaaggaagagcga
ttcaagatggtcgaggagtttaaccaaaacgacgtgccgatttttttgatttcgctgaaa
gcaggaggaacgggactaaatcttgtcggggccgacgtcatcattcactatgacccgtgg
tggaatgaggcggcgcaaaatcaggctacggacagggcgcatcgaattggtcagacaaaa
aacgtcttggtttataagctgatcgtcaaagatacgattgaagaaaaaattcttaaaatg
caagagcaaaaatcaaagcttgcagatgacatcttgtccggcaagggcatgcagagcggg
attattgataaagatgatctgatgaatctgttgtga
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