Ligilactobacillus ruminis: LRC_12220
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Entry
LRC_12220 CDS
T01626
Symbol
priA
Name
(GenBank) primosomal protein n'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LRC_12220 (priA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_12220 (priA)
Enzymes [BR:
lrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRC_12220 (priA)
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LRC_12220 (priA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
PriA_C
DEAD
ResIII
Helicase_C
Zn_ribbon_PriA
PIF1
Cas3-like_C_2
Zn_ribbon_6
AAA_19
nSTAND_NTPase5
ADDB_N
AAA_30
Ligase_CoA
Motif
Other DBs
NCBI-ProteinID:
AEN78481
UniProt:
G2SPG8
LinkDB
All DBs
Position
complement(1271788..1274220)
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AA seq
810 aa
AA seq
DB search
MRGERMSLYAQVIVDVPTMQTNKPYTYLVPSELEEQIQAGMRCVVPFGKGSRKIQGFVLD
VSNQKPDEDFEIKKIISLMDFVPVLNEEALQLADWMANYTFSFKISCLQTMLPNVMRAGY
EKSIRLLDENVEPEIKKLFDQNNLLAFDDKMDAKIRRKIYGLRKKDKVEIVYHVNDRARV
KETEFIKSKITAENISAFLNAQRKTATKKKRMLEKLLDLGNDSVERIKFQKQNSFTSNDV
KQAENSGWLSLVSKETYRNPSENATTESSSPRKLTAEQNVCVTRINQAIEQEESDVFLLQ
GVTGSGKTEVYLQTIAHALKLSKKALMLVPEISLTPQMVRRVKGRFGPKVAMLHSALSDG
ERFDEWRRIERGEAQVVVGARSAVFAPLDRIGIIIMDEEHETSYKQDEMPRYNAREVAIW
RGKHHHCPVVLGSATPSLESRARGQKSVYQRLLLTKRINGRPMPHVELVDMREALKSAPS
PDFSAELLTKIKEHLKRDEQVVLMLNRRGYSSFVMCRECGFVLKCPNCDISLTLHMDTHS
MKCHYCGHEESIPRICPSCRSNKIRYYGTGTQKVEEQLHELLPNARVLRMDVDTTRRKGA
HERLLERFGRHEADILLGTQMIAKGLDFPDVTLVGVLNADTALGLPDFRSSEKTFQLLTQ
VSGRAGRADKNGEVVIQTFNKEHYAIQFACTQEYERFYAYEMQLRHRLGYPPYYFTIKIT
ASYDNEADACRKMYEIRRELSQVLSKSAKILGPTPKAIMRVNNRYYYQIVIEYKKEPRLE
EYLQDLLVRSQTDEPKGLKLIIDRDPISFM
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgaggggtgaacggatgagtctttacgcacaagtaatcgttgatgttccgacgatgcag
acgaacaaaccctatacttatcttgttccgagcgaattggaagagcagattcaggcaggg
atgcgttgcgttgttcctttcggaaaaggatcgcgaaagatacagggattcgtgcttgat
gtctcaaatcaaaagccggatgaggattttgaaatcaaaaaaataatttctttgatggac
tttgtgccggttttaaacgaagaagccttgcagcttgcggattggatggcaaattacacg
ttttcgttcaaaatttcatgtcttcagacgatgctgccgaacgttatgcgtgccggttat
gaaaagagcattcgtttgctggatgaaaacgtcgaaccggaaatcaagaagttatttgat
caaaacaaccttttggcttttgacgacaagatggacgcaaaaatcaggcggaaaatttat
ggactgcgcaaaaaagataaagttgagatcgtctatcacgtaaatgacagggcacgagtc
aaagaaactgaatttatcaagtcaaaaattactgcggaaaacatctctgcatttttaaac
gcccaaagaaagactgcaaccaaaaagaaacggatgcttgaaaagctcttggatcttgga
aatgattcggttgaaagaatcaaatttcaaaaacaaaacagctttacgtcaaatgacgtc
aaacaagccgaaaactcaggctggctgagtcttgtttcaaaagagacctatcgaaatcct
tcagaaaacgcaacaacagaatcatcttcgccaaggaagctgacggccgaacaaaacgtt
tgcgttacaaggataaatcaggcaattgagcaagaagaaagcgatgttttcctgcttcag
ggcgtgacgggaagcggaaagacggaggtttatcttcaaacgatagcccacgctctcaag
ctttcaaaaaaggctttgatgcttgttccggaaatttcgctgacgccgcagatggtccga
cgcgtcaaaggacgttttggaccaaaggtggcaatgcttcacagtgcgctttccgatggt
gaacgttttgacgaatggcgcagaatcgaacgcggtgaagcgcaagtagttgtcggggca
cgctctgctgtttttgcgccgcttgaccggattggcataattattatggatgaagagcat
gaaaccagttataagcaagatgaaatgccgcgttataatgcgcgcgaagtggcaatttgg
cgcggaaaacatcatcattgcccggttgttttgggttctgcaacgccttctttggagtcg
agggcacgtggtcaaaaaagcgtctatcagcgtttgcttttgacgaaacgcatcaacgga
cgtccgatgcctcacgtagaacttgttgacatgcgcgaagctttaaaaagcgcgccatcg
cctgatttttcagctgaattactgacgaaaatcaaagagcatcttaaaagagacgaacaa
gtcgttttgatgcttaatcgaagaggatactcttcatttgtcatgtgtcgagaatgcggc
tttgtcttaaagtgtccgaattgcgacatttcgttgacgcttcatatggatacgcacagt
atgaagtgtcattattgcgggcatgaggagtcaattccaagaatttgtccgagctgccga
agcaataagattcgctattatggaacgggcacgcaaaaagtcgaggaacaactgcatgaa
ttgcttccaaatgccagagttctgcgaatggacgtcgatactacgcgacgcaaaggagcg
catgaacgccttctggagcgtttcggccggcacgaggccgatattttgctgggaacgcaa
atgattgccaagggccttgactttcccgacgtcactctcgttggggttttgaatgccgac
actgccttgggactgcctgattttcgatcaagcgaaaagacttttcagcttttgacgcag
gtcagcggtcgcgccggacgtgcggataaaaacggcgaagtcgtgattcagacttttaac
aaggagcattatgcgattcaatttgcgtgcacgcaggaatatgagcgtttttatgcttat
gaaatgcagctcaggcatcgtttggggtatccgccgtactattttacgatcaaaattacc
gcaagctatgacaatgaagctgatgcctgtaggaagatgtatgaaataagaagggaactg
agccaggttttgagcaaatccgcaaagattcttgggcctacgccaaaggccatcatgcgc
gtgaataatcgctactattatcagattgtgattgaatataaaaaggaacctcgacttgaa
gagtatttgcaggatcttttggtcagaagtcagacggatgaaccgaagggcctgaaattg
attattgaccgtgatccgatcagctttatgtaa
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