Ligilactobacillus ruminis: LRC_12950
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Entry
LRC_12950 CDS
T01626
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm00470
D-Amino acid metabolism
lrm00550
Peptidoglycan biosynthesis
lrm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
LRC_12950 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
LRC_12950 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
lrm01011
]
LRC_12950 (murD)
Enzymes [BR:
lrm01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
LRC_12950 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
lrm01011
]
Precursor biosynthesis
Amino acid ligase
LRC_12950 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
MurD-like_N
Mur_ligase_C
AlaDh_PNT_C
Pyr_redox_3
NAD_binding_7
MurD_N
2-Hacid_dh_C
Pyr_redox
DAO
Thi4
FAD_binding_3
Pyr_redox_2
Shikimate_DH
FAD_oxidored
NAD_binding_8
Motif
Other DBs
NCBI-ProteinID:
AEN78549
UniProt:
G2SPU7
LinkDB
All DBs
Position
complement(1347865..1349235)
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AA seq
456 aa
AA seq
DB search
MKDIKDYQGKNVLVVGLGKSGISAAYLLKRLGANVTINDKKKLENEDQLAAFSKRNIKCV
TGSHPLELLDDTDLIVKNPGIPYENELISAAVERNIPIITEPELAYRITESQLIGVTGTN
GKTTTTTMIALMLNQNREEGKAYTCGNIGISAAKVAQEVGEKDVMVTELSSFQLMGIEKL
RPHIAVLTNIYEAHTDYHGSRENYVKAKMRIVKNQKEDDYFVVNWDSEEWRNLSKLTKAK
IVPFSRQDTTEEGAYVKNGVIFFRGEEIMHVDEIKVPGSHNVENALAAISVAKIEGQSNE
NIAEVLRTFSGVRHRTQYVTTFNGRKFYNDSKATNMEATEKALSGFENPVVLLCGGLDRG
FTFERLVPYLKKHVKAMVVFGQTADLLEEAGKLAGIGQIEHAKDSSAAVSAAYEMSSEGD
IILLSPACASWDQWPTFEARGDAYIEEVEKLTREEK
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatataaaagattatcaaggtaagaacgttttggtcgttggtttgggaaaaagc
ggaatcagtgcagcttatttgttgaaaagacttggcgcaaacgttacgatcaacgataag
aaaaagcttgaaaacgaagatcagcttgcagctttttcaaaaagaaacattaagtgcgtt
acgggttctcatcccctcgagcttttggacgataccgatttgatcgttaaaaatccaggg
attccgtacgaaaatgagctgatttctgctgcggtcgaaagaaacattccgattataacg
gaaccggaacttgcgtatcgaattaccgaatcgcagcttatcggagttaccggaacaaac
ggaaagacaacaacaacaacgatgattgcgctcatgctcaatcaaaatcgtgaagagggc
aaagcttacacgtgcggtaacatcggcatttctgctgccaaggttgcgcaagaagtcgga
gaaaaagacgtaatggtgaccgaactgtccagttttcagctgatgggcattgaaaagctc
agacctcatattgcagttttgaccaatatttatgaagcgcataccgactatcacggatcg
agagaaaattatgtcaaagccaagatgagaatcgtgaagaatcaaaaagaagacgattac
tttgtcgtcaactgggattctgaagaatggcgcaatctttccaagctgacaaaggccaaa
atcgttccgttttcacgtcaagacacgactgaagaaggggcatacgtcaaaaacggagtg
attttcttcagaggagaagagatcatgcatgttgatgaaatcaaggttcccggttcacac
aacgttgagaatgctttggcagcaatttccgttgccaagattgaaggccaaagcaacgag
aatattgccgaggttttaagaacgttttccggtgttcgtcacagaacacagtacgtgacg
acctttaacgggcgcaaattttataatgactccaaagcaacgaatatggaagcaactgag
aaggccttgtcaggttttgaaaatccggtcgttttgctatgcgggggattggatcgaggc
tttactttcgagcgactcgttccgtatcttaaaaagcacgtcaaggcaatggtcgtcttc
ggacagacggccgatttattggaggaagcaggcaagcttgccggcattggtcagatcgag
catgcaaaagattcctcagccgccgtttcagctgcttatgagatgagttctgaaggagat
atcatcttgctttctcctgcctgcgcaagctgggatcagtggccgacgtttgaagcgcgc
ggggatgcatatattgaagaagtcgaaaaattgacacgggaggaaaaatga
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