Ligilactobacillus ruminis: LRC_12980
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Entry
LRC_12980 CDS
T01626
Name
(GenBank) penicillin binding protein
KO
K08724
penicillin-binding protein 2B
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm00550
Peptidoglycan biosynthesis
lrm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
LRC_12980
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
lrm01011
]
LRC_12980
Peptidoglycan biosynthesis and degradation proteins [BR:
lrm01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
LRC_12980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PASTA
PBP_dimer_2
Motif
Other DBs
NCBI-ProteinID:
AEN78552
UniProt:
G2SPV0
LinkDB
All DBs
Position
complement(1351715..1353871)
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AA seq
718 aa
AA seq
DB search
MNKYGKRRMAEKRDVQNQRDFGKYFALIVVIVFTVFIGRFLYIAVTKKVSGNNLVEIANQ
TYHEKSTLKASRGTIYDASGQLIVEDTKRYSIYVVLSKTAVAYGQKLYLKNSDKKKAAEI
LHEYLGMDVDKLLSLFSQPKYQVELGKKGQDISLSTKNQIVKEMKKSKITGINFSESTDR
MYPNGIFSSHLIGVISKDSSGNLYGTMGLEALYDNYLKGRDGYDMRSTDSHGIKLSGMKS
RLVKAKDGDNIYTTFNSRDQSYLESLLNKAQETYHPKSMNVVLMNAKTGAILAASQRPTF
NPQTREGIEDQWKNTLMEDTYEPGSVMKILTMSAAIDSGNYNENEYFKSGSMKIGNSQRV
NDWEVAGWGYLNYRQGFIRSSNVGMAKLEQKMGAKLWEKYIKKFGLLKSTDSGLSSNESS
GSIEYKYPIEQANTAFGQGINVTVLQMMQAFSSVANNGEMVKPYLIEKIVNPTSGKTIKT
DKKTVVGHPIKKSTAEKVRDMMQDVVNDPNGTGNAYKINGYDIGVKTGTAQISGNNGYLT
GETNYIFSVAGMAPIKNPQYVLYVTMKQPAGFGGKTSSEMLATIFNPLMKRVLDESQNES
TPSEAIDVKSVVGQETGNAVKSFSDKDLVVTAIGNGAKIIKQSSDAGEELLPGQRIILVT
DSGQTLPDLKGWTKSDMFKLKNLLGINVKFKGSGFVENQSVKPGTKIADIKELTVELK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatatggaaaacggcggatggctgagaaaagggatgtacaaaaccagcgtgat
ttcggaaaatattttgcgctcattgtagtgattgtctttacggtctttatcgggcgtttt
ctttatattgccgtgacgaagaaagtgtccggcaacaatctggttgaaatcgcaaatcaa
acgtatcatgaaaagagcacgctcaaggccagccgcggaacgatctacgatgcttcaggc
caactgatcgttgaagatacgaaaaggtattcgatctacgtcgttctttctaaaacggca
gttgcgtacggtcagaagctgtatttaaaaaacagcgataaaaaaaaggctgcagagatt
ttgcatgaatatttgggaatggacgttgacaagttgctgtcattgttcagtcagccgaag
tatcaggtcgaactcggaaaaaagggacaagacatttctctttcaacaaagaatcaaatt
gttaaagaaatgaaaaaaagcaaaattaccggaatcaatttcagtgaatcgactgatcga
atgtatccaaacggaattttttcatctcatttgattggcgtcatttccaaagacagcagc
gggaatttatacggcacgatgggacttgaagcactttatgacaactatctcaaaggaaga
gacggttatgacatgcgctcaacagacagtcacggaatcaaactttccgggatgaaaagc
agactggtcaaggcaaaagacggcgacaacatctacacgacgtttaattcacgggatcaa
agctatctcgaaagcctcctgaataaagcgcaggaaacctatcatcctaaatcgatgaat
gtggtgctgatgaatgccaaaacgggggcaattctcgcagcaagtcaacggccgacattt
aatcctcagacaagagaaggaattgaagatcaatggaaaaataccttgatggaagatact
tacgagccgggatccgtcatgaagattctaaccatgtctgcagccatcgacagtggaaat
tataatgaaaacgaatattttaaatcaggatcaatgaaaataggcaacagtcagcgggtc
aatgactgggaagttgccggttggggatacttgaactatcgtcaagggttcattcgttcc
tcaaatgtcggaatggcaaagcttgagcaaaagatgggcgcaaaactttgggaaaaatac
attaagaaattcggccttttgaaatctactgattcagggctcagcagcaacgagtccagc
ggaagcatcgagtataaatatccgatcgagcaagccaacactgcatttggccaaggcatc
aacgtcaccgtccttcaaatgatgcaggctttttcttccgtggcaaacaacggtgagatg
gtaaaaccgtatcttattgaaaaaatcgtcaatccgacaagcggaaagacgatcaaaaca
gacaaaaagaccgtcgtaggtcatccaatcaaaaagtcaacggcagaaaaggttcgcgac
atgatgcaagacgtcgtaaacgatcctaacggaacgggcaatgcttacaaaatcaacgga
tatgatattggcgtcaaaacaggtactgctcaaatttccggaaacaacgggtatttgacc
ggggagacgaattacatcttttcggttgcggggatggcaccaatcaaaaatcctcaatac
gtgctttacgtgacgatgaagcagccggcgggattcggaggaaaaacgtcaagcgagatg
cttgcaacgatttttaacccgttgatgaaacgagtgcttgatgaaagccaaaacgaatcg
acaccaagcgaagcaatcgatgttaaaagcgttgtcggccaagaaacgggaaatgccgtt
aaatcgttttcagacaaagacttggtagtgaccgcaatcggaaatggtgctaagattata
aagcagtcttctgatgcgggcgaagaattgctgcccgggcaacggataattctcgtgact
gattcgggacagacgttgccagacttgaaaggatggacaaaatcagatatgtttaaactg
aagaatctgcttggcatcaatgtcaaattcaagggatccggatttgtcgaaaatcaaagc
gtcaagcccggaaccaagattgctgatatcaaagagcttacagtagaattgaagtag
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