Ligilactobacillus ruminis: LRC_13940
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Entry
LRC_13940 CDS
T01626
Name
(GenBank) DNA mismatch repair protein
KO
K07456
DNA mismatch repair protein MutS2
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LRC_13940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_13940
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
LRC_13940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
Smr
MSSS
Gp-FAR-1
ATG17_like
AAA_22
MutS_III
DUF2321
DUF5830
Motif
Other DBs
NCBI-ProteinID:
AEN78646
UniProt:
G2SQC0
LinkDB
All DBs
Position
complement(1447790..1450150)
Genome browser
AA seq
786 aa
AA seq
DB search
MNEKGLKTLEYDKVKNMLLAYATTEMGKNMVFELAPSSDYEWIEQALDETKDGADILRLK
GGIPIPKLESVKKHLKRLDIGASLSAKELAEIGRVLRVTNETKRFFRDLEADEIELNHLY
DEADMLETLPDVSRRLLMSIENDGHVTDEASSLLASLRRQITTTEGEIRNRLGNFVRGKS
SKYLSDSLVTIRNERYVIPVKAEYKNAFGGIVHDQSSSGQTLFIEPKEIVELNNRLRQQQ
IAEKEEIKRILEELSELIAPYTEEIENNAKILGKFDFINAKAKLAHDLKATQPLISREND
VYLRQVWHPLLDSKKAVRNDVAIGKDYQAIVITGPNTGGKTITLKTLGLVSMMGQSGLFI
PAFENSRIGVFDDIFADIGDEQSIEQSLSTFSSHMTNTVEILKSIDERSLVLFDELGAGT
DPQEGAALAIAILDAVGAKGSYVVATTHYPELKAYGYERPQTINASMEFDAETLKPTYHL
LIGIPGRSNAFDISKRLGLDDEIVEAARKLTDQDSQDLNEMIADLVQKRHEAEEEKARFK
KYLDESEKLHADLEKGYGTYVRERDNMIENAKRKANEIIENAQKKSEEIISELHKMKQSG
ASLIKENELIDARSRLNDLEQPIMLKKNKVLQRAKKQQEFHENDDVLVKTYGQRGVLTKR
LGKHEWEVQLGILKMKIDEDDLEKIKVEENNRRGAGTVLKSSGSSHVSPQLDLRGQRYEE
AMVNVDRYMDAAILAGYPSVTIVHGKGTGALRQGIIKYLQQHRTVKHFEFASPSNGGNGA
TVVYFK
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgaaaagggtttaaaaacgcttgaatacgataaggtcaagaatatgctattggcg
tatgcaacgaccgaaatggggaaaaacatggtttttgagttggctccgtcatctgattac
gaatggatcgaacaagcgttggatgaaacaaaggatggggctgacatattgagactcaag
ggcggaattccgattccgaaacttgaatccgtaaaaaaacatttaaaaagacttgacatc
ggtgcttcgctcagcgcaaaagaacttgcggaaataggacgtgttttgcgcgttacgaat
gaaacgaagcggttctttcgagatcttgaagcggatgaaatcgaactgaatcatctttat
gacgaagcagacatgttggagacgcttcctgacgtatcaagacgtttgttgatgtcgatt
gaaaatgacgggcacgtaactgatgaggcttcgtctcttttggcaagtctgagacgtcag
attacgacaacggaaggagaaatcagaaatcggcttggtaatttcgtacggggcaagtct
tcaaaatatttgagcgactcgctggtcacaatcagaaacgaacgctacgtaattcccgtt
aaagcagaatataagaatgcttttggcggaatcgttcatgatcaaagttcttccgggcag
acgttgttcatcgaaccgaaagaaatcgttgagctgaataatcgtttgcgtcaacagcag
attgctgaaaaagaagaaatcaagcggattcttgaagaattatccgaattgattgctcct
tatactgaagaaattgaaaacaacgccaaaattttgggcaaatttgattttataaatgcc
aaggccaaacttgcgcatgatctaaaagcaactcagccgttgatttcaagagaaaatgac
gtctacctgcgacaagtatggcatcctttgcttgattcaaaaaaggccgttcgaaacgat
gttgcaatcggcaaagattaccaggcaatcgtgattaccggaccaaataccggtggcaag
acgattacgctcaaaacgctcggattggtcagcatgatgggacagtccggcttgtttatt
cctgcgtttgaaaatagtcgaattggcgtattcgatgatatttttgcggatatcggcgat
gagcaatcgattgagcagagcttgtcgacgttttcgtcacatatgacgaataccgtcgaa
attttgaaaagcattgatgaacgttcactggttttgtttgatgagcttggagccgggaca
gatcctcaagagggtgcggccttggcaatcgcgattttggatgcggtcggtgccaagggc
agctatgttgttgcaacgactcattatccggaacttaaggcctatggttatgagcgcccg
caaacgatcaatgcttcaatggagtttgatgctgaaacgctcaagccaacgtatcatctg
ctgatcggcattccgggacgaagcaatgcttttgacatttccaaacgacttggacttgat
gatgaaattgtggaggcagcaaggaagctgacggatcaggacagtcaggatttgaacgaa
atgattgccgatcttgttcagaaacgtcatgaagcagaagaggagaaggcaagatttaaa
aagtatcttgatgaatcagaaaagcttcatgctgatttggaaaaaggctacggaacctat
gttcgcgaacgtgacaatatgattgagaacgctaaaaggaaagctaacgaaatcatcgag
aatgctcaaaagaaatcagaagaaataatttctgaacttcacaagatgaaacaaagcggg
gcgtctttaatcaaagaaaatgagctgattgatgcaagatcgcgtttgaatgaccttgag
cagccgataatgctcaaaaagaacaaagtgctgcagcgtgccaagaaacagcaggaattt
catgaaaatgacgacgtgctcgtcaaaacgtatggtcaacgcggtgtgttgacgaaacgc
ctcgggaaacacgaatgggaagttcagcttggcattttaaaaatgaaaatcgatgaagac
gatcttgagaagataaaggttgaagaaaataacaggcgtggagccggaaccgttcttaag
tcgtccgggtcaagtcacgtttcaccgcagctcgacctcagggggcagcgatacgaagaa
gcgatggtcaacgttgaccgctatatggatgctgcaattcttgcaggctatccatcggtt
acgatcgttcatggcaaagggactggtgctttgcgccaaggaatcatcaaatatcttcag
cagcatcgtaccgtcaagcattttgaattcgcttctccaagcaacggcggaaacggtgca
accgttgtttattttaagtaa
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