Ligilactobacillus ruminis: LRC_16580
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Entry
LRC_16580 CDS
T01626
Name
(GenBank) ATP-dependent nuclease subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
lrm
Ligilactobacillus ruminis
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_16580
Enzymes [BR:
lrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRC_16580
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LRC_16580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_30
AAA_12
ResIII
Flavi_DEAD
DUF1512_C
KdpD
Motif
Other DBs
NCBI-ProteinID:
AEN78901
UniProt:
G2SRV3
LinkDB
All DBs
Position
complement(1707424..1711158)
Genome browser
AA seq
1244 aa
AA seq
DB search
MAFKFTQGQSQAIHASGHDILVSASAGSGKTRVLVERVVDKIKHGIDVDRLLILTFTEAA
AKEMKERIQKALREACNQTEDEHQKGFLINQLVKLNTADIRTIDAFCLKFIQNYYYKASL
DPSFRLLTDQTEKRLLREDVLNDLLEKLYGQDDADFIELAENFSNDRSDDGLTELIMRVF
DFANVNPDPENWIKSLPQTYQIGTKDFTESAFFKEKLLPMLVEKLRMLAINMEKARVTMQ
EQDESFFAKQIALFEDEGNRYENYAKMLEDGADYATLQKTFAEMSYARFPSTKRTDDSLL
TETKANVKLIRDEAKKIFTEKIVPEYFAVSSTDLEQALKQAYRLVKKLSEVVFKFVAAYQ
TEKRSRRVLEFSDLEHYTLSILQKNDDIRQDLEERYAEIMVDEYQDTNQLQETILTTIAR
KSPGNMFMVGDVKQSIYGFRLADPGLFLEKYRRYANDDSDGQRIILAENFRSVKNVASIT
NLIFSQIMSREVGEMDYDDNAQLVYGSSDYPEKQTTAEILLYFDKRNETAEKTTGKMRWD
MTSENHESMDADFTIESAAQGQMLATAEKIKQLVDSGFEIYDRKQKKMRKISYGDIAVLS
GTHGNHLILSEEFKRLGIPYKVQKSENYFQTTELRIMLALLNVIDNPRQDIPLVAVLRSP
IVGLNENELALLRINDRSGDYYQALLKFYEESPGQNQELHNKVKKFMEMLERFRTLARQN
ELSTLIWKIYDETHFLEYVSGMPGGSQRAANLHALYERAAAYEKTSFKGLFQFIRFINKM
QDQNEDLASALNEASDDVVSVMTIHGSKGLEFPVVFLVDATKRFNTDSLKGKYLLNEKDG
VSITCLNRKTRVETVTPMQSYAKEKVARKLCAEQMRLLYVALTRAEQKLFIVAGYKNEDD
ALSKWKQAKKSEDLLLSADVRENAVCFMDWIGAAFYRERNFCKRFDCVDDVRPCHYLDKF
SAEYEFEKISFDELSKNADNQPLDLKKWLKDQAKEELDADDADFINKVLTYRYDHEGLVK
TAAYQSVSEIKSAFADPDEKVMSNLDTSENEKENANRFVSKMELPKFMVHEEKISGAAIG
SAVHLVMEKLDLTKKPSESSVKEEISELVKDGILNDEVAKRIRISDICRFFETDLGKTIL
EKHEFVKREVPFSLLIPANEIFVGLSESDPVLVHGIIDGYVDDGKKVILFDYKTDHAAEE
NVPEVKKRYAGQIELYSMALKSILNKPVDEKYLYLTQLGKAVDL
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaaattcactcaagggcaatcgcaggcgattcatgcaagcggacatgacatt
ttggtttcggcttctgccggttccgggaaaaccagggttttggttgaacgggtggttgac
aagatcaagcacggcatcgacgttgatcgtctgttgattttgactttcaccgaagcggcc
gccaaggaaatgaaggaacgaattcaaaaggcattgagggaagcttgcaatcaaacggaa
gatgagcatcaaaaaggttttttgatcaatcagctcgttaagctcaatacggcagacatc
agaacgatcgatgccttttgtctcaaattcattcaaaattactactacaaagcatccctg
gatccgtcttttcgacttttgaccgatcagactgaaaaaagattgctgagagaagacgtc
ttaaacgatctgcttgaaaaattatacggtcaagatgacgcagactttatcgaactggca
gaaaacttctcaaacgatcgcagcgatgacggcttaacggaactcatcatgagggttttt
gatttcgcaaacgtcaatcctgatccggaaaattggatcaaaagcttgcctcaaacgtat
cagattggcacgaaagactttaccgagagtgcatttttcaaggaaaagcttttgccgatg
ctcgttgaaaaattgaggatgcttgcgatcaacatggaaaaagcacgcgtcacgatgcag
gaacaagatgaaagtttttttgcaaagcagatcgcgctttttgaagatgaaggcaaccgg
tacgaaaattatgcgaaaatgctggaagatggcgcagactatgccacgctgcagaaaact
tttgctgaaatgagctatgcgcgttttccgagcacgaaaagaaccgacgattcactgctt
acggaaacaaaagcaaacgtcaagctgattcgcgatgaagccaaaaaaatctttacggaa
aaaatcgttccggaatatttcgccgtttcaagcaccgatttggaacaggccttgaagcaa
gcatacaggctcgtcaaaaagctcagcgaagttgtttttaagtttgtcgctgcctatcaa
acggaaaaaagaagcagacgggtgcttgaattcagtgatctggagcactatacgctttcg
attctgcaaaaaaacgatgacatcaggcaagatctggaagagcgctatgcagaaatcatg
gttgacgaataccaggatacaaatcagctgcaggaaacgattttaacgacgattgcaaga
aaatctcccggcaacatgttcatggtgggcgacgtcaaacagtcgatttatggtttccgt
ctggccgatccgggattgttccttgaaaaatacaggcgctacgcaaatgacgattcggat
gggcaacgcattattctggcggaaaatttccgctccgtcaaaaacgtggcttcaattacc
aacctgattttcagtcagatcatgagtcgagaagtcggcgaaatggattatgacgacaat
gcgcagcttgtgtacggttcgagcgattatccggaaaaacaaacgacggcggaaattttg
ctgtattttgacaaaagaaacgaaaccgcggaaaagacaaccggaaagatgcgctgggac
atgacgtcagaaaatcacgagtcgatggatgcggacttcacgatcgaaagcgcagcgcaa
ggacaaatgctggcgacggccgaaaaaatcaagcagttggttgattccggatttgaaatc
tatgatcgcaagcaaaagaaaatgagaaaaatcagctacggcgacatcgccgtgctgtcc
ggaactcacggcaatcatttgattttgtcggaagaattcaagcgtttgggaatcccttac
aaggtccaaaaatccgaaaactattttcagacgacggagcttcgaatcatgctggcgttg
ctcaacgtgatcgacaatccgcgccaggacattccgcttgttgccgtgcttcgctcacca
atcgtcgggctgaatgaaaatgagctggcgcttcttcgaatcaatgaccgctcaggcgac
tattaccaggcattattgaaattttacgaagaatctcccggtcaaaaccaggaattgcat
aataaagtcaaaaaattcatggaaatgcttgaaagattccgaacgttggctcgtcaaaac
gagctgtcgactttgatctggaaaatttacgatgaaacgcattttttggaatacgtttcc
ggaatgcctgggggaagccagcgcgcggccaatcttcatgcattgtacgagcgtgctgca
gcatacgaaaagacgagtttcaaaggactgtttcagttcattcgcttcatcaacaagatg
caggatcaaaacgaagatttggcgtccgcgttaaacgaagcaagtgatgacgttgtcagc
gtcatgacgattcacggcagcaagggcctggagtttccggtggtctttttggttgatgcg
acaaagcgtttcaacactgacagtctgaaaggaaagtatctgctgaatgaaaaggacggc
gtgtcgatcacgtgcctcaatcgcaaaacgcgtgtcgaaaccgtcactccgatgcagtcg
tacgcaaaggaaaaagtggcaagaaagctttgcgcagagcagatgcgcttgctttacgtc
gctttgacgcgtgccgaacaaaaactcttcatcgtggccggatacaaaaacgaagatgat
gccttgagcaagtggaaacaggcgaaaaaaagcgaggatctgcttttgagtgctgacgtg
cgcgaaaatgccgtttgctttatggactggatcggtgctgccttttatcgcgaacggaat
ttttgcaagaggttcgattgtgttgatgacgtcagaccgtgtcattatcttgacaaattc
agtgccgagtatgaatttgaaaaaatcagcttcgatgagctgtcgaaaaatgccgacaat
cagccgcttgatttaaagaaatggctgaaagatcaggctaaagaagaattggatgcggat
gatgccgacttcatcaacaaagtgctgacgtatcgctatgatcatgaaggccttgtcaaa
actgcggcataccagtcggtttctgagatcaaatcggcatttgcggatcctgacgaaaag
gtgatgagcaaccttgacacaagcgaaaatgaaaaggaaaatgccaatcgattcgtttca
aagatggaattgccaaaattcatggtgcatgaagaaaaaatcagcggcgcagcaatcggg
tctgccgttcacttggtgatggaaaaacttgatctgacaaaaaagccgagcgaatcttca
gtcaaagaagaaatttccgaattggtcaaggacggaattttgaatgatgaggtcgcaaaa
agaatccgaatcagcgatatctgccgcttttttgaaaccgatctgggcaagacgattctt
gaaaaacatgaattcgtcaaaagagaagttccgttttccttgctgattcctgcaaatgag
atttttgtcggcttgagcgaatcggatccggtgcttgtgcacggaatcatcgacggctat
gtcgatgacgggaagaaggtcatcttgtttgactacaagacggatcatgctgctgaagaa
aacgttcccgaagtcaaaaaacgctatgctggacaaattgagctttattcaatggcgcta
aagagcatcttgaacaagcctgttgatgaaaaatatctgtatttgacgcaactgggcaaa
gcagtggacttgtaa
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