Lacticaseibacillus rhamnosus LOCK900: LOCK900_0308
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Entry
LOCK900_0308 CDS
T02730
Name
(GenBank) DinG family ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lro
Lacticaseibacillus rhamnosus LOCK900
Pathway
lro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lro00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LOCK900_0308
09124 Replication and repair
03420 Nucleotide excision repair
LOCK900_0308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lro03021
]
LOCK900_0308
03036 Chromosome and associated proteins [BR:
lro03036
]
LOCK900_0308
03400 DNA repair and recombination proteins [BR:
lro03400
]
LOCK900_0308
Enzymes [BR:
lro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LOCK900_0308
Transcription machinery [BR:
lro03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LOCK900_0308
Chromosome and associated proteins [BR:
lro03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
LOCK900_0308
DNA repair and recombination proteins [BR:
lro03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LOCK900_0308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD
DEAD_2
ResIII
PDDEXK_1
HBB
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AGP70165
LinkDB
All DBs
Position
complement(305097..307481)
Genome browser
AA seq
794 aa
AA seq
DB search
MAHNRIGIREFVELTVRTGDLNPVTSNSNNTAMIGSQIHRKLQAAHRESDYEKEVYLKTT
VTVNDEDYQLEGRADGVWTENKTLTVEEIKTSARSWEECSQNTKDRYWAQARIYGHLLCQ
QRHEDHAVITLVYVQTSNDTVSRFTETKSAAELADDFTDLLDEFTAWLKLRSDIIKQRNA
SIATLKFPFPQYRTGQHEFAAAVYKAIYSRARLFVQAPTGTGKTISTLFPTIKAMGSGLI
QRAFYLTAKQSTRRVAEQAMALMANVGLRAKSITLTAKDTITFADEPDDPSQNPYMLGYY
DRLKPALHDLLEHEDQLTRSVIEAYARKHTLDPFEFSLDASLFCDVVICDYNYLFNPLVF
LQRFFSEADDSQFFLVDEAHNLVSRARDMYTASLTNQDFINLKQALVPFKGAALTKVRRT
MTRIVTTMNTLADQLLNGQSLIFQAAPLDDLAQVLTRFTETVHDWLAEPPTPALQPAVEL
VLPVFFLANQYLRIGDFYDDTFKTEIAKEHDTIMIKMLCLDPSHFVDDALKKGRGAVLFS
ATLSPMPYFQKLLGGSEHSLAYTLPSPFTPENQAIIVDASVHTTYRRRTQDLPQLIASLT
TLVRAKAGHYLFFFPSYAYLKMAYEAFTAANPDLKTCVQENAMNESERQAFLDHFKAGSE
PVIGFAVLGGIFAEGIDLKGTQLIGVAIVSVGLPGINPETDQLRAYFDHDAGQGFAYAYQ
LPGFNNVLQAGGRVIRGAKDVGVILLIDERFITPRYARLFPDHWTHAQVSYNPTQLAQLL
THFWEAHHENPTHA
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggctcataaccgtatcgggattcgcgaatttgtcgagttaaccgttcgtaccggtgat
ctaaatccggttaccagtaactcaaataacaccgccatgatcggcagccagattcaccgc
aaacttcaagcagcgcatcgggagtcggattatgaaaaagaagtctatttaaaaacaacc
gttaccgtcaatgacgaggattatcaactggaaggccgtgccgatggggtttggaccgaa
aacaagacgctaaccgttgaagaaattaaaaccagtgcccgttcatgggaagaatgttcg
caaaacacgaaggatcgctactgggcgcaggcacggatttatggtcacctgctttgccaa
cagcggcatgaagaccatgccgttatcaccttggtttatgttcaaaccagtaacgacacg
gtcagccgcttcactgaaacaaaaagtgccgccgagttagcggatgatttcaccgattta
cttgatgaattcactgcctggttaaaactacgcagcgatattattaaacaacgaaatgct
tctatcgccaccctcaagtttccgtttccgcagtaccgcactggccagcacgagttcgct
gccgctgtttataaagctatatacagccgcgcgcgtttgtttgtgcaggcgcccaccggt
accggcaaaaccatttcaacgcttttcccgaccattaaagccatgggtagtgggttgatt
cagcgcgctttttatctgacagccaagcaaagtacgcgtcgggtggcggaacaggcaatg
gcgctgatggcaaacgttggacttagggccaaaagtatcaccttaacagctaaagacacg
attacctttgccgatgagcccgatgaccctagtcaaaatccctatatgctcggttattat
gatcgcctgaaacccgcactgcatgatcttttggagcatgaggatcaactcacccgatcc
gtgattgaagcctatgcccgcaaacacaccctggatccatttgaattttcgttagatgcc
agtttgttttgcgatgtggtgatttgcgactacaactatttattcaatcccttggttttt
ttgcagcgattcttcagtgaagcagatgacagtcagtttttcttggttgatgaagcgcac
aaccttgtcagccgagcgcgcgatatgtataccgcaagtctgaccaatcaggactttatc
aacctcaaacaagcactcgttccgttcaaaggagccgcattgaccaaggtacgccggacg
atgacacgaattgtcaccacgatgaataccttggctgatcagctactcaacgggcagtca
ctgatctttcaagcagcaccgctcgatgatctagcgcaggtgttgacccggtttaccgaa
acggttcacgactggctggcagaaccgcccacccccgcgctgcagcctgctgtcgaactt
gttttaccagtgttttttctcgctaatcagtatttacgcattggtgatttttatgacgat
accttcaaaaccgagattgccaaggaacatgacacgattatgattaaaatgctctgtctg
gacccgtcccattttgtcgatgatgcgttgaaaaaaggccgaggcgcggttttattttcg
gcaaccttgtctccgatgccgtatttccaaaagttactgggaggctctgaacatagcctt
gcttacaccttgccatcaccgtttacgccggaaaatcaggccatcattgtcgatgcgagt
gtccacaccacgtaccgccgccgcacgcaggatttaccgcagctgatcgcaagtctcacc
acgctggtcagggctaaagccgggcactatcttttctttttcccatcttatgcctatctg
aaaatggcatacgaggcgtttactgcagcaaatcccgatcttaaaacctgtgttcaggaa
aatgccatgaatgaaagtgagcggcaagcatttcttgatcactttaaggctggtagtgag
ccggtgattggttttgctgtgcttggcggtatctttgctgaagggattgacctcaaaggg
acgcaattgattggggtggcgattgtgtcagtgggcttaccgggcatcaatccggaaacc
gatcagttgcgggcatattttgatcacgatgctggtcagggctttgcctacgcgtaccag
ctgccaggctttaacaatgtcttgcaggcaggtggccgggtgattcgcggggccaaagat
gtcggcgtaatcctgctcattgatgaacgctttatcaccccgcgttatgcccgtctgttt
cctgatcactggacccacgcccaggttagctacaatcccacgcaattagcacaattactg
acacacttttgggaggcccatcatgaaaacccaactcacgcgtga
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