Lacticaseibacillus rhamnosus LOCK900: LOCK900_1310
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Entry
LOCK900_1310 CDS
T02730
Name
(GenBank) Metallo-beta-lactamase superfamily hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lro
Lacticaseibacillus rhamnosus LOCK900
Pathway
lro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOCK900_1310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lro03019
]
LOCK900_1310
Messenger RNA biogenesis [BR:
lro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOCK900_1310
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AGP71119
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Position
1252884..1254566
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AA seq
560 aa
AA seq
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MTKINLVALGGVRENGKNMYAVEVDDQIFVCDFGLKYPDNELLGIDVVIPDFSYLTENAD
RIAGIFLSHGHADAVGALPYFLVDHPVPVFGSELTIAMAKVFMQHDSKAKKFKDFHVIDE
KSVIDFGDVSVSFFKTTHSIPGSLGIDIETSEGQIVYTGDFKFDPSATPMYQTDWARLAQ
IGNKKVLALLSDSANAESPYPNANEHEIYDHIKETFEYQDGRIIVAGVASNIQRIQQVIN
AAASLGRRVVLTGRDVEKVVKTAIRMGYIKLPDDDILAKTKELKGLAPEKTVILETGRMG
EPMKSLQRMATSRHRLIHIHEGDLVFITTTIAHAMETMAARTKDMIYRAGGDVKVLGDDI
HSSGHAYKNDLQLMIDLLKPEYLVPVQGEYRLLAAHAEIAHEAGIPLANIFIVGMGDILR
YEKGQMNASGHVNAGNTMIDGIGVGDIGNIVLRDRKMLAEDGIFIAVVTIDRKKKRVVSK
PKVTSRGFVYLKTSRDLLAESGTLVTETVQKNLDNKEFDWTHLKQDVRDKLSRFLFEQTK
RRPVILPVIMEVNQNSAKRQ
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagatcaatctggtcgctcttggtggggtacgtgagaatggaaaaaacatgtac
gccgtcgaagttgacgaccaaatttttgtatgcgattttgggttgaaataccctgataat
gaattacttgggattgatgttgtgatcccggactttagctatttgactgaaaatgccgac
cgaattgccggaatctttctaagtcacggccatgcggatgcagtaggagccttaccttat
tttcttgtggatcacccagttccggtttttggttcggaattgacgattgcaatggccaag
gtcttcatgcagcatgacagcaaagccaagaagtttaaagactttcatgttattgatgaa
aagtcggtcattgactttggtgatgtgtcagtgtcgttctttaaaacaacgcatagcatt
ccaggctcgttaggtatcgatattgaaaccagcgaaggccagatcgtgtataccggcgac
tttaagttcgatcctagcgctaccccgatgtatcaaacggattgggcgcgcttggcacaa
atcggtaataagaaagtgttggcgttgttatctgattcagccaatgcagagtcgccttat
ccgaatgccaacgaacatgaaatttatgaccatatcaaagaaacttttgaataccaagat
ggccgaattatcgtggcaggtgttgccagcaacattcagcgcattcaacaggtgattaat
gccgctgcatcgcttgggcggcgggttgtcttgaccggccgtgatgtcgaaaaggtcgtt
aaaaccgccattcgtatgggctacattaaattaccagatgatgacattttagctaagacc
aaagagctaaaaggcttggcaccggaaaagaccgtcattcttgaaaccggccggatgggt
gagccgatgaagtcattgcaacgaatggcaacatcccgtcatcgcctgattcacatccat
gaaggtgatcttgttttcattaccaccacgattgcccatgcgatggaaaccatggcggcc
cgaacgaaagacatgatttatcgtgcaggcggggatgtcaaagtcttaggcgacgatatt
cactcttccggccacgcctataagaatgatctacagctgatgatcgatttactcaagcca
gaatatttggtgccggtacaaggtgaatatcgcttactcgcagctcacgcggaaattgcg
catgaagctggcattccgttagctaacatcttcattgtcgggatgggcgatattttgcgg
tacgaaaaaggccagatgaacgcctctggtcatgttaacgctggcaataccatgatcgat
ggcattggcgttggcgatatcggtaatattgttttacgtgaccgcaaaatgctggccgaa
gatggtattttcattgcggttgtcaccattgaccgtaagaaaaaacgcgttgtttccaag
cccaaagtcacaagtcgcgggtttgtttatcttaaaaccagtcgtgacttattggccgaa
agcggcacattggtaacggagacggttcaaaagaatctggataacaaagaatttgactgg
acccatttaaaacaagatgttcgagataaactcagccgcttcttattcgaacagacaaag
cggcggcctgtcattttgccggtcattatggaagttaatcaaaacagtgcaaaacggcaa
taa
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