Lacticaseibacillus rhamnosus LOCK900: LOCK900_1356
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Entry
LOCK900_1356 CDS
T02730
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lro
Lacticaseibacillus rhamnosus LOCK900
Pathway
lro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOCK900_1356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lro03019
]
LOCK900_1356
03400 DNA repair and recombination proteins [BR:
lro03400
]
LOCK900_1356
Enzymes [BR:
lro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOCK900_1356
Messenger RNA biogenesis [BR:
lro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOCK900_1356
DNA repair and recombination proteins [BR:
lro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOCK900_1356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Peripla_BP_4
TniB
YBR126W-A
Motif
Other DBs
NCBI-ProteinID:
AGP71165
LinkDB
All DBs
Position
1302720..1304129
Genome browser
AA seq
469 aa
AA seq
DB search
MSQLETALAQHFGFKQFRPGQKAIIESVLSGRDTLGILPTSSGKSLCYQLPTLINHKPTL
IVEPLIALMHDQVGRLQAAGEKRVLALSGQIAPPQFAQILAYLNVYRYLFISPEMLQRSD
VMSALKQLDLGLLVIDEAHCISQWGPDFRPAYLQLGRVRAQLHVDAVLALTATAPNQVRS
DILKQLAMQNPNTIADSVDRPNIFLGVEMCQNEQEKHQRLDQLLQANVGPTIIYCATRAA
AENLATVLKNAGLKAAFYHAGLDSHQRDLIQRQFQFDQLQVICATSAFGMGIDKANVRLV
VHLYVPESLEAYYQAIGRAGRDGAASLAAMIVTQDDLNRSRGLAGMLPDQTMIQTVFAHP
DIYRDFDDPQINLIEAYIAAGFSLAQTQQQLQHRLAEKQTSFMAMAAFVNESGCRRALLL
KHFDSPPISHHAFCCGPVTAKVLEKLETANVSAQLPPKHWQAVFRQIFR
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgcaacttgaaacggccttggcgcagcattttggctttaaacagtttcgtcccgga
caaaaagccattatcgaatctgttcttagtgggcgtgacaccttaggcattttacccacc
agcagcggcaaatcactttgctaccaattgccgaccttaattaaccataaaccgacttta
attgtcgaaccactgattgcattgatgcatgatcaagtgggaaggctgcaggcagcgggc
gaaaagcgcgttttggcattatccgggcaaattgcgccgcctcagtttgctcagatttta
gcgtatttgaacgtttatcgctatctgtttatttcgcctgaaatgctacagcgatccgat
gttatgtctgcgttgaagcagctggatcttgggttgctggtaattgatgaggcacattgt
atttcacagtggggaccggattttcgtcctgcctatttacaactggggcgagttagggcg
cagttgcacgtggatgccgttttagcgttaacggcaactgcaccgaatcaagtccgcagc
gatattttaaagcaactggcaatgcaaaatccgaatacaattgcggattcagttgatcgg
cctaatatttttctgggcgttgagatgtgtcaaaatgaacaggagaagcatcagcgccta
gatcaactcttgcaagccaatgtcggaccaacgattatttattgtgccactagggcagca
gcggaaaacttggcaacggtgttaaagaacgcgggattgaaagccgctttttaccatgcc
gggttggattcacatcaacgtgatttgattcaacgtcaatttcaatttgatcaactgcaa
gtcatctgtgctacgagtgcatttggtatggggatagataaggctaatgtgcgcttagtg
gttcatttatatgtacccgagtcgcttgaagcctattatcaggcaatcggtcgggcaggg
cgagacggagccgcgagtctggctgcaatgattgtgacgcaagacgacttgaatcgaagc
cggggactggcgggaatgttgccggaccaaacgatgatccagacagtttttgcccatcct
gatatttatcgcgatttcgacgatccccagataaatctgatcgaagcttatattgcagcc
ggtttttcgctggcacaaacgcaacaacaattgcagcatcggctagcagaaaagcaaaca
agttttatggccatggccgcatttgtcaatgaatcaggttgtcgccgtgcactgttactc
aagcactttgattcaccgcccatttcacatcatgccttttgttgcgggccggtgacggca
aaagtactagagaagttagagacagcgaatgtatcggcacagcttccgcctaagcactgg
caggcagtttttaggcaaatctttagataa
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