Lacticaseibacillus rhamnosus LOCK900: LOCK900_2480
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Entry
LOCK900_2480 CDS
T02730
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lro
Lacticaseibacillus rhamnosus LOCK900
Pathway
lro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOCK900_2480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lro03021
]
LOCK900_2480
03400 DNA repair and recombination proteins [BR:
lro03400
]
LOCK900_2480
Enzymes [BR:
lro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOCK900_2480
Transcription machinery [BR:
lro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LOCK900_2480
DNA repair and recombination proteins [BR:
lro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LOCK900_2480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
DUF4090
PRC_RimM
Motif
Other DBs
NCBI-ProteinID:
AGP72271
LinkDB
All DBs
Position
complement(2456368..2460030)
Genome browser
AA seq
1220 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRSLEEIIYFASYVVIDPGDTPMEKKQLLTEREYREKREEYGQTFNAKMGAEAIKELLQ
DVDLEKEVAELKEDLKSAQGQKRTRAIRRLDILDAFKESGNDPAWMVMDTIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKFYQCGVPRE
MALELFKPFVMRELVKRDMASNIKNARRKIDRQDDDVWDVLEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVDGKSIRLHPLVCEAYNADFDGDQMAIHVPLSDEAMAEARMLMLAAHHIL
APKDGKPIVTPSQDVVLGNYYLTMEQKGREGEGMIFKDTNEVLMALQNGYVHLHSRVGIA
ANSFTDKPFTDEQKQKIMVTSVGKAIFNEIMPKDFPYLNEPTQDNIVNGVPDKYFIDKGE
DIHAYLEDAPLIDPFKKGFLSDIIAQVFKVYKVQRTSDLLDDMKTLGYTQSTNSGLTVGI
ADITNLKEKPEIVAAAHKKVATVSKQFRRGLITDDERHDRVIQIWNDAKDEIQQKLVDSF
DPNNPISMMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEVPVISNFREGLTVMEMFMST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLVVRAIREGNEMIEPLY
DRLVGRFTMKDVLDPKTGDVLVKRNTLMDEDMAQKIVDAGVEAVTIRSVFTCNTKHGVCQ
KCYGRNMATGEQVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGEDITQGLPRVQEI
FEARNPKGEAVITEVTGEVTAIDENPAEHTREITVKGETDTRTYSVPYASSVAVAEGDHI
NRGERLTGGSIDPKQLIKVRDVMATENYLLSEVQKVYRMQGVDIGDKHVEVMVRQMLRKI
RVMDPGDTNILPGTLLDIADFKEKNTQAIISGGIPATGRPVLLGITKASLETNSFLSAAS
FQETTRVLTDASIRGKNDPLVGLKENVIIGKIIPAGTGMATYRHEEPKSVGTVSDSVYSI
SDIEKQMKEKDNQQSDTDKQ
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtcaataagtttgaaagtatgcaaatcggcttagcctcgccggacaagatc
cgcagctggtcttatggggaagtcaaaaagcccgaaacgatcaactatcggaccctaaag
cctgagcgggacggcttattcgatgaacgtatcttcggaccgaccaaagactgggaatgt
gcctgtggtaagtacaagcgaatccgctataagggaatcgtttgtgatcgctgcggcgtt
gaagtcacccggtccaaggttcggcgcgaacgaatgggtcatatcgaattagctgcaccg
gtgacgcacatctggtacttcaagggaattcctagccggatgggtctggtactcgacatg
tcgccgcgttcacttgaagaaatcatctattttgcttcctatgttgtgattgatccaggc
gatacgccaatggagaaaaagcagctgctaaccgaacgcgaatatcgcgaaaagcgggaa
gaatatggacagaccttcaatgccaaaatgggtgctgaagccatcaaggaattgttgcag
gatgttgatctcgaaaaagaagtcgctgaattaaaagaagacctgaaatcagctcagggt
caaaaacggacccgtgcgattcgccgtctggacattttggatgcgttcaaggagtccggt
aatgatccggcatggatggttatggatacgattcctgttattccaccggatttgcggcca
atggttcagcttgaaggcggccggtttgcgacctctgatctaaacgacttgtatcgccgg
gtcatcaaccgtaacaaccgtctgaagcgtctgcttgatctcaacgcaccaagcattatc
gtgcaaaacgaaaagcgcatgctgcaggaagcggtcgatgccttgatcgataacggtcgg
cgcggacgcccggttaccggacctggtaaccgcccgctcaagtccttgtcccacatgttg
aaagggaagcaaggccggttccgtcaaaacctgttaggtaagcgtgtcgattactctggc
cgttcggttattgatgttggcccatggttgaagttttatcagtgtggtgttccgcgtgaa
atggccttggaactctttaagccatttgtcatgcgcgaactggttaagcgcgatatggca
agcaatattaaaaatgctcgccggaagattgatcgccaagatgatgatgtctgggatgtc
ctcgaagatgtgattaaggaacggccagtccttttgaaccgtgcgcctactttgcatcga
ctgggtattcaggcatttgaacctgtcttggttgatggtaagtccattcgcttgcaccca
ctggtctgcgaagcttataacgccgactttgatggtgaccagatggcgattcacgtaccg
ctatctgatgaagcaatggcagaagcgcgcatgctgatgctggcagctcaccacattttg
gcacctaaagacggcaagccaatcgttaccccttctcaagacgttgtgttaggtaactac
tacctgaccatggagcagaagggccgcgaaggcgaaggcatgatcttcaaggataccaat
gaagtgttgatggcgttgcaaaatggctatgttcatctgcacagccgtgtcgggattgcg
gcgaactcctttacggacaaaccgtttactgatgagcagaagcaaaagattatggtgacg
agtgtcggcaaggcaatctttaacgagatcatgccaaaagacttcccgtatttgaacgaa
ccgactcaggacaacatcgtcaatggtgtgccggataaatacttcatcgacaaaggtgaa
gatatccatgcttaccttgaagatgcacctttgattgatccattcaagaaaggattcctg
tctgacatcattgcccaggtcttcaaggtttataaagttcagcggaccagtgacttgctg
gatgatatgaagacactcggctatactcagtcaacgaattccggtttgacggttgggatt
gccgacattacaaacctgaaggaaaagccagagattgtggcggcagcccataagaaggtt
gcaacggtttctaagcagttccgtcgtggtttaatcactgacgatgaacggcacgaccgg
gtcattcagatctggaacgacgctaaagatgaaatccagcaaaaactggttgattctttt
gacccgaacaacccaatttccatgatgtccgattccggtgctcgtggtaacatctcaaac
tttactcagcttgccggtatgcgtggtctgatggctgcgcctaacggagggatgatggaa
gttcctgttatctcgaacttccgtgaaggtctaaccgttatggaaatgttcatgtcaact
cacggtgcacgtaaagggatgaccgatacggcgctgaagacggctgactcaggctacctg
acccgtcgtttagttgatgttgcccaagacgtcattgttcgcgaagaagactgcggtact
gatcgtgggttggttgttcgtgcaattcgtgaaggtaacgaaatgattgaaccgctgtat
gatcgtttggttggccggttcacgatgaaagatgtgcttgatccaaagactggcgatgtg
ctggttaaacggaatacgcttatggatgaagacatggctcagaagattgtggatgctggc
gttgaagccgttaccattcgttcggtctttacctgcaacacgaagcatggtgtttgccag
aagtgctatggtcgtaacatggcaaccggcgaacaggttgaagtcggtgaagctgtcggg
accgtggcggcacagtcaatcggtgaaccaggtacccagctgaccatgcgtaacttccat
accggtggtgttgctggtggcgaagatatcacgcaagggctgcctcgtgttcaggaaatc
tttgaagcacggaatcctaaaggtgaagcggttatcactgaagttactggtgaagtaacg
gcaattgatgaaaacccagccgagcatacgcgtgaaattaccgtcaaaggtgaaaccgat
acccggacttacagcgtgccatatgcttctagtgtggccgttgcagaaggagatcacatt
aaccgtggcgaacgcttaactggtggttcaattgatcctaagcaattgatcaaggttcgc
gatgtgatggcaacagaaaactacctgctttctgaagttcagaaagtttaccgtatgcaa
ggggttgacatcggtgataagcacgtcgaagtgatggtacggcaaatgttacgtaagatc
cgcgtcatggatccgggcgacacgaatattctgccaggcaccttgctcgacattgcggac
ttcaaggaaaagaacacgcaagcaatcatcagtggcgggattccggcaacgggtcgtccg
gtcttactggggattaccaaggcttctctggaaactaacagcttcctatcagctgcttcc
ttccaagaaaccacgcgtgtcttaaccgatgcatccattcgcggcaagaacgatccactg
gttggtctgaaagaaaatgtcatcatcgggaagatcattccggctggtaccgggatggcc
acctatcgtcacgaggaacctaagagtgtcggtacggtttccgacagtgtttattcgatt
tcagacatcgaaaaacagatgaaggaaaaagacaaccagcaaagcgacactgacaaacag
taa
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integrated database retrieval system
