Lacticaseibacillus rhamnosus LOCK900: LOCK900_2510
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Entry
LOCK900_2510 CDS
T02730
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lro
Lacticaseibacillus rhamnosus LOCK900
Pathway
lro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOCK900_2510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lro03400
]
LOCK900_2510
Enzymes [BR:
lro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOCK900_2510
DNA repair and recombination proteins [BR:
lro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LOCK900_2510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
DUF7398
Motif
Other DBs
NCBI-ProteinID:
AGP72288
LinkDB
All DBs
Position
complement(2485243..2488770)
Genome browser
AA seq
1175 aa
AA seq
DB search
MNLIDMVQADPELSALWPKLETGRHLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHA
DELAADLSSLLGDALVYDFPVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGIIVTSLA
GYKRILPAPAAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDI
YPLNQDDPIRIELFDTEIDSIRSFDIATQRSLKKLDQIAIAPATDMIASDQVLTDAGARI
GKQATAYKAKVKDAAAKQAITDGLLTTSQQLQALERPENLALYAPELYPEHHRITDYLAS
DALVAFDDYSRLLDSDTNLVQDTAEWYSQLQEEGRLLPKTPNPTIQALNQHDRHPRLYLS
LFQKGMGQLRLDSLTNVPSRNVQQFFSQMPLLKTETDRWVKQKQTVVFLVSDKNRLEKLS
ATLHDFEISNVVTEPNQLLSGKVQLTDGSLKNGFELPDLKLVVVTEHELFNARQRRRARH
QTLANTERLRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIP
VDQLNLVQKYVSADGKTPNVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYA
FGPDDDLQQKFEDEFPYPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAA
FKAVDYGKQVAILVPTTILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNG
TIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRT
LNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDM
ERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANT
LIIENADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSG
FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNKRRGLKTVQKTDAEIDLG
LEAYLPTDYVADSRQKIELYKRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLK
RFADLAWVDHVQKNDQKMTVVLTPQATAKAQGEPIFKALAATTLKAQVAIADGKLTVTLA
VPATMKEDEWLGQLTAFMKGLLAVVNPQPEKKPAA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaatcgacatggtgcaggcagatccggaactgtcggcattatggcctaagctc
gagacaggccgccatttggtgacaggactatcaggttcggccaagacggtcttttttggc
gcactcttgcagcagcaaaaaaagcagctgctgattgtcgaaaataatcggtttcatgca
gacgagttggcagccgatttgagtagtttattaggcgatgcgcttgtttatgattttccg
gttgaagatgtattggcggctgaagtggcggtcagttcaccggaaacccgcaacgaccgg
atcaacgcactgacctttattcaaagcggtcaaccgggcattatcgttaccagcctggca
ggatataagcgaattttacccgcaccggctgcatgggcggcaagtgagttggttgttgat
atggattcagagcttgatccgcaaacggtcgccaagcagcttgtggcgatgggttatcgg
cgtgattcattagtgagtgcgcctggccaatttgccattcgcggcgggattatcgatatt
tatccactaaatcaggatgatccgattcgcattgagttgtttgatacggaaatcgactcg
attcgcagcttcgacattgctacccagcgcagtttgaaaaagcttgatcagattgccatt
gcaccggctactgacatgatcgcttccgatcaggtgctgaccgatgccggtgcgcgaatc
ggtaagcaggcaacagcttacaaagcgaaagtcaaggatgcagcggctaagcaagcgatt
accgatggcttgttgacgaccagccagcagttacaagcattagaacggccagaaaacctt
gcattgtatgcgccggagttgtatccggaacatcaccgcattaccgattatctggctagc
gatgcgctggtagcgtttgatgattacagtcgcctattagatagtgatacgaatttggtg
caggatacggctgaatggtattcacagctgcaagaggaaggtcgtttgttgcctaaaaca
cctaatcctacaatccaagcgcttaatcagcatgatcggcatccgcggctttacctgagc
ctttttcaaaaaggaatgggccagttgcggttggatagcttaactaacgtgccgagtcgc
aatgttcaacaattctttagtcagatgccattgctcaaaaccgaaacggatcggtgggtg
aaacaaaagcagaccgtggttttcctggtttccgataagaatcgcttggagaaattaagt
gccaccttacatgactttgagattagtaatgtggtgaccgaacctaatcagctgctttcg
ggcaaagtgcagttaaccgatggcagtctgaagaacggctttgaattgccggatttgaag
ctggtagtggtgaccgaacacgagctattcaatgctcggcagcggcggcgggctcgccat
cagacgttggcaaatacggaacgcctccgcagctataatgaattaaagccgggcgattat
gttgttcatgtcaaccacgggattgggcaatataccggcatggagacgcttgaagttgac
ggtgtccatcgcgattacatcaccatcgtttatcgcaacaatgacaaactgtttattccg
gttgaccaattaaatctggttcagaaatacgtttctgcagatggcaaaacgcctaacgtc
aataagcttggcggtaccgagtggcaaaagaccaaacgcaaagtggcggctcgaatcgaa
gacattgccgacgagctgattgacctgtatgccaaacgggaagcggaaaaaggttatgct
ttcgggccggatgatgatctgcagcaaaaatttgaagatgagtttccttatcccgagacg
cctgatcaactgcgatcggcaaaagaaattaagcgggatatggagaaacccaaacccatg
gatcgcttgcttgtcggggatgtgggctttggcaaaaccgaagtcgcgttacgggcagca
tttaaagcagttgactatggtaagcaggtcgcaattttagtaccgactaccatcttggcg
cagcagcattttgacaccatgaaggatcgatttgccgattttccggttaaaatcggcttg
ttatcgcgttttcagacaccgcatcaaaacaaaatgacgattaaagggctcaaaaacggc
acgattgacattgttgtcggcacccatcgactgctttctaaagatgtggcatttcgtgac
ctcggcttgttggtgattgatgaagagcagcgttttggggtgaagcataaggaacggatt
aagcaattgaaaagcaatgtggatgtattaacgctgacggcaacgcctattccacgtacg
ctaaacatgtcgatgctgggcgttcgcgacttaagtgtcattgagacgccaccgacaaat
cgctatccgattcagacctttgtgatggagcaaaaccccggtgtcattcgagaagccatc
gaacgagaaatggaacgcggtggtcaggtcttttacctgcataatcgggtggaggatatg
gagcgaaccgtgagtcaattggaagagctagtgcctgacgccagcatcgggtatgcccac
ggtcagatgacggaaacccagctggaaaatgtcatctatgattttctgcatggcgcgtat
gacgtattagtgaccacgaccattattgaaaccggggtcgatatgccgaacgccaatacg
ctgattattgaaaatgcggatcattatggattgtcccagttgtatcagttgcgcggacgc
attgggcgctccagccgtgttgcatacgcttatttcatgtatcaaccgatgaaggtactt
aatgaagtggccgaaaaacggctccaggcgattaaggatttcacggaattaggtagcggc
tttaagattgcgatgcgtgatttgtcgattcgcggtgcggggaacttgttaggcaaacaa
cagcatggatttattgattcggttgggtatgacttgtacacgcagatgttacaagaggcg
gttaacaaacgccgcggacttaaaaccgttcaaaaaaccgatgcggaaatcgacttgggt
ctggaagcatacctgccaacggattatgttgccgactcgcgccagaaaatcgaactgtac
aaacggattcgtgaagcagacagtgatgaagccgaaaccgagattagtgaagatttgatt
gatcgattcggcgattatccacagccggtgacgaatcttttggcaatcgcacatctgaaa
cgtttcgccgatttggcttgggtggatcacgtccagaaaaacgaccagaaaatgacggtg
gtgttaaccccgcaagcgactgctaaagcacaaggcgaaccgatcttcaaggcgttggcg
gctacgactttgaaagcacaagtagcaattgccgatggaaagctgacggtaacgctcgct
gtgccagcaaccatgaaagaagacgagtggttagggcaactaactgctttcatgaaggga
ttgctggcagttgtgaatccgcagccggaaaaaaagcctgccgcctga
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