KEGG   Labeo rohita (rohu): 127151909
Entry
127151909         CDS       T09007                                 
Symbol
xndc1
Name
(RefSeq) short transient receptor potential channel 2
  KO
K10803  DNA-repair protein XRCC1
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    127151909 (xndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lroh03400]
    127151909 (xndc1)
DNA repair and recombination proteins [BR:lroh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     127151909 (xndc1)
SSDB
Motif
Pfam: XRCC1_N zf-C2HC_2 Zn-C2H2_12 Rad50_zn_hook
Other DBs
NCBI-GeneID: 127151909
NCBI-ProteinID: XP_050948179
LinkDB
Position
21:complement(10978974..10984424)
AA seq 406 aa
MAPIKIKHIVSFTSQDSKNGVNNLCDGSNSSRPWLCSVQERSGVLRAELQMERVSAIGFI
DVGNCGSAFIQIDVGRSSWSLDHPYITLLPTATLMSPTDSKEGTGRQNVRMFKKADFLPQ
AAEESWDRLRVTCTQPFNKRSQFGLSFLRIRTVEDEAEDSSVQNEDIAAEQLHTPEKMTS
VLEWLSSPAIQNTFFGRITGDVSSNAQGNPGSLSRAERMVKAAHSNRRSLSTSPSSSTSS
TTPQREDNVKTPPGGFRTSSDQKKTPQEQRKTSKARQSLINSGPSRKRSRPTTFTHEPSS
TSPHRSAHQAPQDSPETRCPLCGESFSPDYLPFHASTCLDSDSVDLMGLREETEVMSSPH
SSVFGSGTDEHMVPCPLCSFRFPPDRIQQHASTCGDTVEPSTVWLN
NT seq 1221 nt   +upstreamnt  +downstreamnt
atggctcccatcaaaataaaacatatcgtttcgtttacatcacaggatagtaagaatggt
gtgaataatctgtgtgatggcagtaacagcagcagaccgtggttgtgcagcgtccaggag
cgcagtggagtcctcagggcagaattacagatggagcgagtatctgctataggattcatt
gatgttggcaactgtggctctgcattcattcaaattgatgtcggacgatcgtcctggtca
ttagaccatccttatatcaccctgctgcccaccgcaaccctaatgagtccaacagactcg
aaagaggggactggtcgtcaaaatgtgcgcatgtttaaaaaagctgattttctccctcag
gctgctgaggagagctgggacagactgcgagtcacctgcactcagcctttcaacaaacgg
tcacagtttggtctgtcctttctgcgcatccgcaccgtggaagatgaagccgaagattcc
tcagtgcaaaatgaagatattgctgctgaacaactgcacacaccagaaaagatgacatct
gtgttggagtggctttccagcccagctatccaaaacacattctttggacgaatcacgggg
gatgtctcctcaaatgcccaagggaatccagggagtttgagtcgggcagaacgcatggtc
aaagccgcccactcaaacagacgctccttgtcaacatcccccagcagttctacatccagc
acaacacctcagagagaagataacgtgaaaaccccaccaggtggatttaggacttccagt
gaccaaaaaaagactcctcaggaacaaaggaagacatctaaagcacggcagagtcttata
aacagtggcccttcacggaagagatccagacctacaacattcacccatgaacccagctca
acaagcccacacagaagtgcccaccaggctccgcaggactctcctgaaacaagatgtcct
ctgtgtggagaatccttcagtcctgattatctgcctttccatgcctccacctgcctggat
tctgattcagtggacctcatgggactcagggaagaaacagaggtcatgagctcaccacac
tcttctgtttttggctctggcacagatgagcatatggttccttgtcctctttgctccttc
cgattccccccagaccgtatccagcagcacgccagcacctgtggcgacacggtagagcca
agtactgtatggctgaactga

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