Labeo rohita (rohu): 127152079
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Entry
127152079 CDS
T09007
Symbol
thbs4b
Name
(RefSeq) thrombospondin-4-B
KO
K04659
thrombospondin 2/3/4/5
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04145
Phagosome
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04518
Integrin signaling
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127152079 (thbs4b)
04518 Integrin signaling
127152079 (thbs4b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
127152079 (thbs4b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
127152079 (thbs4b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127152079 (thbs4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127152079 (thbs4b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127152079 (thbs4b)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127152079 (thbs4b)
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Phagocytosis
Opsonins
127152079 (thbs4b)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127152079 (thbs4b)
Exosomal proteins of colorectal cancer cells
127152079 (thbs4b)
Exosomal proteins of bladder cancer cells
127152079 (thbs4b)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127152079 (thbs4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
127152079
NCBI-ProteinID:
XP_050948446
LinkDB
All DBs
Position
21:complement(27632991..27643167)
Genome browser
AA seq
950 aa
AA seq
DB search
MTGTMHLLAAVSLILTLSSASAESTVYNLLTSPDCLPDLLHGGLAEQGVTELFILTTFRL
QPRTGNTIFSLYNPRDNSKYFEFSVLGKLNKATLRYLRRDGRMSTVTFNNLKLADGEKHR
LLFHLKGLEVGQPGGFPHNQGVLPVPGVELHLDCRLVETLRDLPAVFNGLNNHQGVELKT
MQGKAQEELEELKLAYGDSVENVASLQDCHTHQSDSVQTLGLNTKQLTNQMLELTKVINE
LKDVLIQQVKETSFLRNTISECQACGLGGTEVVKSKCTPGVCFRDDMCIETADGVECGPC
PDGYTGDGYSCDDVDECQFNPCFPGVRCVNMAPGFRCEACPLGFTGKPLEGVGVAYAQTH
KQVCDDIDECKGPDNGGCTPNSVCVNSVGSYQCGRCKTGFTGDQIRGCKPEKSCGNRLQN
PCDPNAQCIEERDGTITCQCGIGWAGNGYLCGKDTDIDGYPDEKLRCRDPTCRKDNCVTV
PNSGQEDADGDGKGDACDPDADGDGILNEQDNCWLTPNINQLNSDKDSHGDACDNCIRVD
NPDQRDTDSDGLGDACDDDMDGDGLKNFLDNCQRVKNRDQLDRDGDGVGDACDSCPDIPN
PNQSDIDNDLVGDSCDTNQDSDGDGHQDSKDNCPLVINSSQLDTDKDGLGDECDDDDDND
GIPDTLPPGPDNCRLVPNPDQIDDNNDGVGDICESDFDQDKVIDRIDNCPENAEITLTDF
RAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTV
TDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKTGPGEHLR
NSLWHTGDTNDQVRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRVRFYEGSELVADSGV
TIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDFQKFSTNNDMDPL
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcacgatgcatctcctcgcggccgtttctctgatcttgactctcagctcagca
agcgcagaatcaaccgtgtataacctcttaacgtcaccggactgcctaccggatctgctg
cacggaggtttggcagagcagggagtaacagaactctttattctcacaacgttccgtctc
cagcctcgaaccggaaacaccatatttagtctgtacaatccacgagacaacagcaagtac
tttgagttttctgtacttgggaaactcaacaaagctactttacgatacctgcgcagagat
ggtaggatgagtaccgtcaccttcaacaacctcaaactggctgacggtgagaagcatcgc
ctgctcttccatctgaagggactggaggtgggccaaccggggggctttccgcacaaccag
ggggtgttaccggtgcctggggtggagctccacctggactgcaggctggtggagacgctg
agagatttaccagctgtgtttaacggcctaaacaatcaccagggagtggagctcaaaact
atgcaggggaaagcacaagaggagttggaggagctcaaactggcatatggtgattcagtg
gaaaatgttgcatcgctgcaggactgccacactcatcagagcgactctgtacagacttta
gggcttaacacaaaacagcttacaaatcagatgttggagctgacaaaggttattaacgag
ctgaaagatgtccttattcagcaggtgaaggaaacttctttcttgagaaacaccatctcc
gagtgccaggcctgtgggctgggcggaacggaggtggtgaaatcaaagtgcactcccgga
gtgtgtttccgtgatgacatgtgtatagaaacagccgatggggtggagtgcggtccatgc
cctgatggatacactggagatggatacagctgtgatgatgttgatgagtgccagtttaat
ccttgcttccctggcgtgaggtgtgtgaacatggctccaggtttccgctgtgaggcatgt
cctcttggattcacgggcaaaccactggagggtgttggcgtggcttatgcacaaacgcac
aagcaggtgtgtgatgatatcgatgagtgcaaaggaccagataatggaggatgcacgcct
aactccgtctgtgtgaactctgtggggtcatatcagtgtggccgatgtaagactggattt
acaggtgatcagatcagaggttgtaagccagagaaaagctgcggaaaccgcttacagaat
ccttgcgaccccaatgcgcaatgcatagaggagagagatggcaccatcacatgccagtgt
ggcattggatgggctggaaacggttatctctgcggtaaagacactgacatcgacgggtac
cccgatgagaagctgcgctgccgagacccaacctgcagaaaggataactgtgttaccgtt
ccaaactcgggacaagaggacgcagatggcgacgggaaaggtgatgcgtgtgacccagat
gcagatggagatggaatactaaacgagcaggataactgctggctgacgccaaatataaat
caactgaacagtgataaggacagccatggcgatgcatgtgacaactgtatccgagtggat
aacccagaccagagagacaccgattctgacggcctcggagatgcatgcgatgacgacatg
gacggagatgggctgaaaaacttcctggataactgccagcgagtgaaaaatcgtgaccag
ctggatcgtgatggggatggggtgggagacgcatgcgatagctgtcctgacatcccaaat
ccaaatcagtctgacattgacaatgatcttgttggagattcctgcgacacaaatcaagac
agcgatggtgatggtcaccaagatagcaaagacaactgcccgctggtaatcaacagctcc
cagctggacacagataaagacggactgggagacgaatgtgacgatgatgatgacaatgac
ggcattcccgacacactgcctcctggaccagataactgccggctggtgcccaaccctgac
caaatagatgacaacaatgatggagtgggcgacatatgcgaatcagactttgaccaagat
aaggtgattgatcggattgacaactgtccagaaaatgcagagatcacactgacagacttc
agagcctatcagactgttgttctggacccagagggtgatgctcagattgaccccaactgg
gtggttcttaaccagggaatggagattgtccagactatgaatagtgaccctggtcttgcc
gttggttacactgcattcagcggtgttgatttcgagggaacgttccatgtgaatacggtg
actgatgacgactatgccggcttcatctttggctaccaagactcttccagtttctacgtg
gtgatgtggaagcaaacagagcagacgtactggcaggccacacccttcagagccgtagct
gaacctggcattcagctgaaggcagtgaagtccaagactggtccaggtgagcatttgagg
aactctctctggcatacaggtgacactaatgatcaagtgcgtctcctgtggaaggatcca
agaaacgttggatggaaggataaggtttcataccgctggtacctgcagcaccgcccacaa
gtcggatacatcagggttcgtttctatgagggatcagagctggttgcagattctggggtg
acaattgatactacaatgagaggaggaagactgggagtgttctgcttctctcaagagaac
atcatctggtcaaacttgaagtaccgctgcaatgacaccattccagaggacttccagaag
ttcagtacaaataacgacatggaccctctgtaa
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