Labeo rohita (rohu): 127152287
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Entry
127152287 CDS
T09007
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127152287 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127152287 (nup98)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127152287 (nup98)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127152287 (nup98)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
127152287 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
127152287
NCBI-ProteinID:
XP_050948826
LinkDB
All DBs
Position
21:complement(9380342..9398385)
Genome browser
AA seq
1804 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTTSTFGQQNTGFGATGGFGSSAFGTTNNTGGLFGTTQNKPGG
LFGSSTFSQPVTSSTSSGFGFGATSGTSNSLFGSTNTGGGGLFSQQNNAFGANKPATFGT
FGTSTSSGGLFGTTNTTSNPFGGTSGSLFGSSSFTAAPPGTTIKFNPPTGSDTMVKGGVT
TSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPSNPMAAGTGGLFGAAATATPSTGT
GLFGSSTPNTGFSFGQNKTSFGTSTGAFGTTTGSLFGQPQQQQQQQQQGSSLFKPFGSAT
TTQNNTFSFGNSSSMGLFGNTAASQAGGLFGNTNTSTATGFGTGIFGQTNTGFGNVGTQN
LFGNKPAGFGTTTTSAPSFGTGTGLFANKPTLTLGTNTNTSTFGFGATGTGGGLFGNKTA
ATGLGTGLGTGFGGAVGTGQTSLFGNNQNKLGSTLGSVGTFGTGGFNTGANTLNFGAAQQ
PVALTDPNASAAQQAVLQQQISALAYSPFGDSPLFRNPLSDPKKKEERLKPTNPAAQKAL
TTPTQYKLTPRPATRVRPKALSSSGSSKSQLFDGLDDDEPSLNNGAFMPRKSIKKLVLKN
LNNSSLYNNSVNRDADDLASPSEYPQNGLSLSMDERETREVTLERSGEDDLEVSKFYTNP
ITKPIPHAQPSPLLQDTISEFNLRGAASHRNGLEASSEDISLAEDSIQEERDEELEAHKT
PHPAGIVLSRVGYYTIPSMEELGKMLNENGECIVENFTVGRKGYGSVFFSGEINLTNMNL
DEIVHFRRKEIIVYPDDKDKPPVGEGLNRRAEVTLDGVWPNDKTTCSQIKTPERLTEMNY
EGRLEAASRKQGARFLEYRPETGSWVFEVAHFSKYGLQESDEEEEVPPAKLDLKKLKTGV
PPGVPQLPLTQQQMAPQAQSTAVLELLSRVSELDSDMADITQEHPADSVLGEEDVERTLE
ENKLRSETPAEHEPMSASSQIASSMGINPHTLQIMKASLFAEDDECDLFQEHGSSKLIQD
LASPKVLLSGAVRPSIGALLQTKFTSGGGLFSQLPEAPFGGIPQKLSKSLASESPWPSLG
PSFLLPAPPPEPTLRTVGARRLGGPVPLESSVTLGKGRLLMDAALFRGRSFRVGWGPNWT
LVHCGDQLSVTEAMKEQSAEIMGFGFLPKPTKSKPITESPFKVRMEQVVGLEPKQSAESL
ALYHRPLEIGLKHSTINTEDSCPFIQPAKGVDALHGYAEWIVEVNKDVGGGDAGLAHWRQ
VWTLCAALWGRLGDRDVEAEQYSDYQQQLERRRSFSHWLSECATECIEEEVGRALQRNHA
EAIFSYLTGHCISKACKLSQKSGDHRLSLMLSQAVGSQFCRDLLALQLSDWNSMQTDSFI
EEERLRIFALLAGKPVWQSTDSCINVCSELDWKRCVAVHLWYMLPPTASVADALAKYESA
FQGSEEVKRYACPPLPPYVDELELLGLDEEMDETESKKPLYDICFHLLKLYSDRHYSLQQ
LLDPSTVTADHLDYRLSWHLWNVLQALSYNHLSTSCQGLLHASYAAQLESAGLWEMAIFV
LLHIPDSGRRESAVREMLNLHCSLKETEESMEKEQFLTEKLLIPIKWIHEAKAIRACREG
DKRSEALHLYKAGHWNHCHRLVIQHLASDCIINDNHKYLLDFLEGLAVPERSVQIQDWDT
SGRVYLDYIHVIQILQDIQQTESPGYELERLHTEVTSLCSRIERLPCSKAKDRLAQSEMA
KCVANILRVVLSLQQGGEGTPDPRHIPLCQLAPHIGRLPMPEDYALEELRSLTQSYLQEY
VISH
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaaatcttttggtgctccctttgggggagggacaggaggatttgggactact
tcgacatttgggcaacaaaatactggatttggagcaacggggggctttggatcttcagca
tttgggacaacaaacaacacaggtggactgttcgggaccacccagaacaaacctggtggc
ctatttggctcaagcaccttcagtcagcctgtcacatcctccaccagtagtgggtttggg
tttggtgccaccagtggcacgtcaaacagcctgtttggaagcaccaacactggaggtggg
ggattgttttcccagcagaataatgcctttggtgctaacaaaccagccacttttggcact
tttggtaccagcaccagtagcggtggattatttgggacaaccaacacaacatccaatcct
tttggaggaacatcaggctctttgtttgggtcatcaagttttactgctgcaccccctggc
acaacaatcaaattcaatccaccaactggaagtgacacaatggtaaaaggaggtgtgaca
accagcatcaacaccaaacaccagtgtatcactgcaatgaaggaatacgagaacaaatct
ttagaggaattgaggcttgaggattaccaggcaggaaggaagggtccttctaaccccatg
gcagctggcacaggtggtctctttggagcagcagccacagctactcccagtactggcact
ggactctttggatcctcaactccaaacactggcttcagctttggccagaacaagacctca
tttggcactagcactggggcttttggtacaaccacaggaagtttgtttggccagccacag
cagcagcaacaacaacagcagcaaggttccagtctcttcaaaccatttggctcagctacc
accacccaaaacaacactttctcctttggcaacagcagcagcatggggctgtttggcaat
acggctgcctctcaggctggaggactgtttggaaacactaacacaagtaccgccacaggc
ttcggcacaggaattttcggccaaactaacacaggttttgggaatgtgggtacacagaat
ctttttggtaataagcctgctggatttggcaccaccaccactagtgcaccctcctttgga
acaggcactggtctgtttgcaaataagcctacactcactctagggactaacacgaacacc
tcaacctttggatttggtgcaactggtactggtgggggtctttttgggaacaaaactgct
gcgactggcctgggaacaggattggggactggctttggaggagctgtaggaactggccag
acatcattgtttgggaacaaccagaacaagttgggttccaccctggggtcagtgggcacc
tttgggactggaggctttaacactggagccaacactctgaattttggtgccgctcaacag
cctgtggctctgactgaccccaatgcatcagctgcgcagcaggccgtcctccaacagcag
atcagtgcattggcctattctccttttggagactcacctctcttcagaaatccactgtca
gacccaaagaaaaaggaagagcgtctgaagcccacaaatccagctgcccagaaagccttg
actaccccgactcagtacaaactgacccctcgtcctgccacccgtgttcgtcccaaagct
ctgtcatcctcgggctcctccaaatctcagctctttgatggacttgatgatgatgaaccc
tctcttaacaatggagccttcatgcctaggaagagcataaaaaagcttgttttgaagaat
ctgaataacagcagtctttataacaactctgtgaacagagatgctgacgacttggcctcc
ccttcagagtacccacaaaatgggctcagtctgagtatggatgaaagagagactcgagaa
gtaactctggaaagaagtggggaggatgatctggaggtctcaaagttctacaccaacccg
atcaccaaaccaattccacacgcccagccaagccccttgctacaggacacaatctctgag
ttcaatttgcggggagctgccagtcatcgcaatggcctggaggccagcagtgaggacatc
tctctggcagaggattccattcaggaggaaagagatgaggagcttgaggctcacaaaact
cctcacccagctggtatagttctttcccgtgtgggctactacaccattccatcaatggaa
gagctgggaaaaatgttgaatgagaacggggagtgtattgtggagaacttcactgttggg
aggaaaggctacggatcggttttcttctctggtgagataaatcttaccaacatgaacctg
gatgagattgtgcacttcaggcgtaaggagataatcgtgtaccctgatgacaaagacaag
cctcctgttggagaaggactaaacagacgtgctgaggtgaccctagatggtgtgtggccc
aatgacaagacaacatgctctcagattaagactccagagaggctgactgagatgaactat
gagggccgacttgaggcagcctcgcgtaaacagggtgcccgctttttggaataccgacct
gaaactggctcctgggtctttgaggtggcccacttctcaaagtatggactccaggaatct
gatgaagaagaggaagtccccccggccaagcttgacctgaagaagctgaagacaggcgtt
ccacctggggttcctcagcttccactgacccagcagcagatggcgccacaggctcagagt
acagcagttcttgagctgctcagccgtgtgtcggagttggacagtgacatggctgacatt
actcaagagcacccggcagacagtgttttgggtgaggaggatgtagagagaactttggag
gagaacaagctgagatctgaaactcctgctgagcacgagcccatgtctgcatcaagccag
attgcttcctcaatgggcattaaccctcatacgctacagattatgaaggcctccctcttt
gcagaggatgatgaatgtgacttgtttcaagagcatggttcttcaaagctcatacaggat
ttggcttcccccaaagttttgctttctggagctgttcggccatcaattggagccctttta
caaacaaagttcacttcaggaggagggcttttttcccagttgccagaggcaccttttggt
ggaatacctcagaaacttagcaagtcactagcatcagaatctccatggccatcgttgggt
ccttccttcctgttgccagcccctcctccagaacctactcttcggactgtgggggcccgc
aggttgggagggccagtacctcttgagagctccgtaactctaggaaaaggccgtctgctg
atggatgctgctttattcagagggcgatctttcagagtgggctggggtcccaactggaca
ctggtgcactgtggagatcaacttagtgtcacagaggcaatgaaggagcagtcggcagag
atcatgggatttggcttcttacccaaacctaccaaaagcaaaccgatcactgaaagtccg
tttaaagtgcgtatggagcaggtagtaggcctggagcccaagcagtcagcagagagcctt
gctctgtatcacagaccactggagattggtctaaagcacagtacaatcaacactgaggac
tcctgtccattcatccagccagcaaagggagtggatgctctgcatggttatgcagaatgg
attgtggaggtcaacaaagatgtaggaggaggggatgctggtctggcccattggcgccaa
gtttggactttgtgtgctgctctttggggtcgtcttggtgaccgggatgtggaagctgag
caatactcagactaccagcagcagcttgagagacggaggagcttctcgcactggctctct
gagtgcgcgactgagtgcattgaggaggaagtgggtcgagcccttcaacgcaaccatgct
gaggccatattcagttaccttaccggtcactgcataagcaaggcctgcaagctgtcccag
aagagtggggaccatcgtctttctcttatgctgtctcaggcagtgggttctcagttttgt
agagatctattggctctgcagctcagtgactggaacagcatgcagactgactccttcata
gaggaggagaggctgcgaatttttgctttgcttgcaggcaaaccagtgtggcagtcaaca
gacagctgtataaacgtgtgctccgaactggattggaagcggtgtgttgctgttcatctc
tggtacatgctgcctcctactgcatctgtagctgatgcccttgccaaatacgaatctgca
tttcagggttcagaggaggtgaaaaggtatgcttgccctcctttacctccatatgtagat
gaactcgagttgttgggtttggatgaagagatggatgagacggaatccaaaaagccactc
tatgacatctgcttccacctgctcaaactttacagtgacaggcactacagcctacaacag
ctacttgacccaagcacagtaactgctgatcatctggactaccggctgagctggcacttg
tggaacgtgttgcaggctcttagctacaaccacctgtccacctcatgccagggtttgctg
catgccagctatgctgcccaactggagagtgcaggattatgggagatggctatcttcgtg
ctgctgcacatacctgactctgggcgcagagagagtgcagtgcgggagatgcttaacttg
cattgctcccttaaggagacagaagagtcaatggagaaggagcagtttctgacggaaaag
ttgctgatccccatcaagtggatccatgaggccaaagccatccgtgcttgtagagagggg
gacaaacgtagtgaggccttgcacctttacaaggccggccattggaatcactgccatcgg
ctggtcatccagcacctggcctcagactgcatcattaatgataatcataagtaccttctg
gacttcctagaggggttagcagtgccagagcgcagtgttcagattcaggactgggacacg
tctggacgagtctaccttgattacattcatgtcattcagatactgcaggacatccaacag
acggaaagtccaggttatgaacttgagcgactgcatacagaggtgacatctctctgcagt
agaatagagcgcctcccctgctccaaagctaaagacagacttgcgcaatcagagatggcc
aaatgtgtggctaacatccttcgggtggtcttgagtctccagcaaggtggtgaaggcact
ccagatccccgacacatccctctttgtcagcttgctccacacattggacgtctacccatg
ccggaggactatgctttagaagaactccgcagccttactcagtcgtacctgcaagagtat
gttatcagtcactga
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