Labeo rohita (rohu): 127152505
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Entry
127152505 CDS
T09007
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127152505 (setx)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127152505 (setx)
5.6.2.5 RNA 5'-3' helicase
127152505 (setx)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127152505 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
UvrD-helicase
AAA_30
Viral_helicase1
AAA_22
AAA_16
DUF4515
GLF
NAT10_TcmA_helicase
nSTAND3
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
127152505
NCBI-ProteinID:
XP_050949158
LinkDB
All DBs
Position
21:complement(28244581..28271789)
Genome browser
AA seq
2377 aa
AA seq
DB search
MEKCLWCTTALEVEGDAAIVAMLRRYCSGRLSERERNSLNEDLSCCLECVVEYHRARDGV
PDLHKRLWEMEKARLMNLLGTTLDKELEEDDIFIIEDDHEKPVSKISPAEFHDNLRFLLF
EVLKYPYLLCCRDLCDLVVKALCKLQDMKQSLTVFEKYQGTYLLLVHPNEQVRRWAIDTA
KTMKSVDRDAYYDLQEIFSCMFYVIELGISLDLPDLNQESYAGGVIQMLPSHLYDSQNKK
NYWLGICMLLTQLSAEAMDSLFMGQFNIPLCILNTMDGLKNEDNPASDPFWPALHCFMVI
LDRLGSKIWGQVDPNTAFQTITGAASYVAEIRNIRKKTMRGMVKVEPEYDDNMVTCSQMV
YDCYASEKSNQASSSSSNSGISSNYMIYEDMQSLVTVLDSEMGQSMRVYGSTFLWFIPFV
RSIMELPELNASYISEVIHYLCDKIRENRHMLTGQTSVCDKVSEFFTRILIQIVELHSTE
GRMGILSRCAHKWVEEIVLCIVLSEETPDRMSGVHGVSSTSYNLGVVGRQHASGEGIGAI
ILGCMKLIRLLLKEGIRRSVPSATHFLNLLNKQLRRVTTKRWNLTRSESDELQKCLLRVV
RSMPERPASPLPVVPPPCAPSVEAATNTVVSRNSVPSLNRQQHEDQEAGPSRVADVSAFI
KEEPFWNCLDDNCVLDEEICRGLQDIIKAKKEPPDPVSISKRRPAVELECIKPDLGRVQE
IRSRLNDNQNLSKIKAIAKQKPGESLKPVLAKEECGFGAVEEEEEDDDEPLNVRWNCLIK
SVHKVESSDSEVDSSAVGKTPNRSMHTSKENVESSTIVISDDDDSDNDERPNAILRSPED
RVLPESPGRDYDDLSESQVFEFETQQYVASAWDDSDFDASVLPKKPQSDLLLKPLLKEPP
HEASPSSSETEPIPDEDIERACQQAEDKIREQQQPQEPADSCASSLAKPSSSAENWDKFV
KPKPLPLKTPKTTPSAKKQPKKPLIIDALAQKIRRHPWKRGSTSQDIEEPSSSTTPPAVS
SSSPSSSCVSSPYFSASTSRGTPAIVPPKKVRKVVEPESTAERLGLKKKERKAFELSQRS
LDCVAKLRCHGQKVQVDPQRKTKRVCRAAKTTPQKRIVKGNKKLMGSQDIQFFRQSREKN
QRPATTLAPKPAKTKQPSETRMPKPTVASSESGDFLPSPQPDPDHQQDNEKPASETSSRG
DGVGNDTKLESKYFQASDTADVNMEEEPPPTLGSKDEDDEEWMFLTQMEPTDMELCSQME
QFEEENDEELFLTQRDPVDMDIDTDSESDTPGQPVLAPKPIPAPPGGNDDHLFLKPGMSP
VSQKKAKPSTTKIYTPSSRSASLVLEMEKGAKPPPAANVAKAKIPRPPPMPPPKTFQPLP
TLQPKPLPLQPLPPPQLPKPLPLQSRPPQQLPKPLPLQHTPYAPKLVTSSKISSTSEPPS
YKVYQRPEAPVNAPVNRPAPPMDQSPKFDLSVLTQAILKWEYRMLENYKAFGSPNDLCQL
PLKRVPVHFPTYLEYFNTLYPLLLINAFEEMANEWLKEDRVKINLTVQGIEYSNRTASAS
FTASISPETDARQLYPKEEDLVLLWLPDNTGAYARNEPNFHEPHPHFGYVSRSNVSNRGS
RSILNLTIQTRGNVSSVNSQPVCCEVIGSLISIFREFRALCSLRSGPMLRPLLAPHASYF
THTLDSPTDLGSPEFNRDQARAIDCGLAMIRRPQKTPKFLLIHGPPGTGKSKTIGGLLYK
LLSSGINSAAPAGNQHNKSRRTRVLLCAPSNAAIDSLMKKVILIFKEKCRNINAPQGNCG
DINLVRLGSERTISKSLKPFSLDHQTKARAQRTQQTAEADIYRRKEQLDQSIENLSQRCA
KTKKDSPDFKKLTEQKLQLLKERERLSRQIKECRSRRQESQAHVLQNAHVICCTLSTSGS
TVLENAFRRLGHEPFSCVIIDEASQAKETETLIPMVYRSPAVILVGDPNQLPPTVVSQKA
KEFGYDQSLMARLCKNLCQSNPQPSPILLLSMQYRMHPEICAFPSKYIYNSALIDDWQGQ
CRQYDQEKTTVTESELRLPRSLRGPCVCETAQKRCSNSWPFRPYKVFDVTDGAEKKERDS
FSNHKEVKLVLLLLKMLGEKQSVRVGVITPYNAQKQRITEAIRGSGIQLQVDVDTVDGFQ
GKEMDCIIVSCVRASNENGSIGFVGNRQRMNVTITRAKFSLFILGHLRTLREQSDWGALI
EDARSREAIIQTMQKDFESDVRKILKPEREPLTRSLSYPPVEKPSTVTSPVTHTPAETGP
APFPRPHRDASNAPVPRLIPLDCPNNPRMSDRPTDPRFANRRPIREQRPDRDGRGLPESH
RSTNRANSYEADSRSTGHSSRYYSKHRGSSPPRRHRR
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtgtctgtggtgcaccaccgcccttgaggtggagggtgacgcggcgatagtc
gccatgttgcgtcgctactgctcaggacggctgtccgagagggagaggaactctctgaat
gaagacctcagctgctgtctggagtgtgtggtggaataccatcgagccagagacggggtc
cctgatctgcacaagcgtttgtgggaaatggagaaggctcgactcatgaatttgttggga
accactctggacaaggagctggaagaggatgatatctttattattgaagatgatcatgag
aagcctgtgtcgaaaatctctcctgcagaattccatgacaatctccgtttcctgctgttt
gaagtcctgaagtatccatacttgctttgctgccgtgatctgtgtgatttggtggtaaag
gctttgtgcaagttgcaggacatgaagcagtctttgactgtgtttgagaagtatcaagga
acatatctgcttctcgttcatcccaatgaacaggtgcgccgctgggcaatcgatacagca
aagaccatgaagagtgtggaccgggatgcctactatgaccttcaggagattttctcctgc
atgttttatgtcattgagcttggaatatctttggacttgccagatttgaatcaagagtct
tatgcagggggcgtcatacaaatgctgccctctcacctctatgattcgcaaaacaagaag
aactactggctaggtatctgtatgttactaacgcagctcagcgcggaggcaatggactct
ttgttcatgggacagtttaacatccccctttgcattctcaatacaatggatgggctgaaa
aatgaggacaatccagcttctgacccattctggccagcccttcactgttttatggtaatt
ctggaccgacttggttctaagatctggggtcaggttgaccctaatacggctttccagact
atcacgggtgcagcaagttatgttgcggaaataagaaacattcggaaaaaaaccatgagg
gggatggttaaagtggaacctgaatatgatgacaatatggtgacctgcagtcagatggtg
tatgactgttatgcctcagaaaaatctaaccaagcatctagttcgtcatccaacagtggt
atttccagcaactatatgatctatgaggacatgcaatccctggtcaccgtgcttgattct
gaaatgggccagagcatgcgcgtatacggcagcacttttctgtggttcattccatttgtc
cgttccataatggaacttccagagctcaacgcttcctatattagtgaagtcatccactat
ctttgtgataagatacgagaaaatcgacacatgctaaccggacagacaagcgtgtgtgat
aaagtgtccgagttctttactcgtatacttattcaaattgttgagctacactctactgaa
ggacgaatgggaatactttcccgctgtgcccacaagtgggtggaagagattgttttgtgc
atcgtcctgtcagaagaaacaccagacaggatgagtggggttcatggggtcagttcaacc
tcatacaaccttggggtagttggaagacagcatgcatctggagaaggcattggtgccata
attcttggctgcatgaaactgattcgacttctgctgaaagaagggataaggagatccgtc
ccatccgcaacccactttctgaacttgcttaacaagcagttgcgcagagttacgacaaag
cgatggaatctaacacgttctgaatctgacgagcttcagaagtgtttgttaagagttgtc
cggtcgatgccagaaagacctgcttctccgctccctgttgttccacccccatgtgcccca
tcagtcgaggcagctacaaacactgttgtttccagaaattcagtgccatccctaaatcgg
caacaacatgaggaccaggaggcaggtccgagcagagtagcagatgtatctgcttttatc
aaagaggagccattttggaattgtttggatgacaattgcgtcttagatgaggaaatctgc
agaggtcttcaggacatcattaaggctaagaaggaaccccctgacccagtgtcaatttca
aagcggagaccagctgttgagttggaatgcattaaaccagatctgggtagagtgcaggaa
attcggtccagattaaatgataaccagaatttgtcaaagatcaaagccattgccaaacaa
aagcctggtgagtccttaaaacctgtattggctaaagaggaatgtggttttggagctgtt
gaggaggaggaggaggatgacgatgaaccccttaatgtcagatggaactgtctgataaaa
tctgtccacaaggttgaatctagtgactctgaagttgatagtagtgctgttgggaaaact
cctaacaggtctatgcacacctcaaaagaaaatgtggagtccagtactattgtcatctct
gatgatgatgattctgataatgatgaaaggccaaatgccatcctgaggtctccggaagat
cgggtcttgcctgagagcccgggtcgtgattatgatgatctcagtgagtcacaagtcttt
gagtttgagacccagcaatatgtggcatctgcctgggacgattcagattttgatgcatca
gtcttgccaaagaagccccaatcagacctactactcaaaccactgttgaaagaacctcct
catgaagcatctccatcaagttcagagactgaaccaattccagatgaagacattgagagg
gcttgtcagcaagcagaagataagatcagagaacagcagcagccacaagagccagcagat
tcatgtgcatcttcactggctaaaccatccagtagtgcagaaaactgggataaatttgtc
aaaccaaaacctctgccacttaaaacccccaaaacaactccatctgctaagaaacagcct
aaaaagccattgataattgatgcccttgctcaaaaaatcaggcgccacccctggaaacgc
ggctccacatctcaggacatagaggaaccttcgtcttcaactactcctcctgctgtatca
tcctcctctccatcctccagctgcgtttcctctccatatttttctgcctccacatcacgt
ggcacccctgccattgttcctccaaagaaggtgcgtaaagttgttgagccagaatcaaca
gcagagcgtttgggtttaaaaaagaaggaacggaaagcctttgaactttctcagcgctcc
ctggattgcgttgccaaactgaggtgccatggccagaaagtgcaggtggacccacaacgg
aagacgaagcgagtgtgtcgagccgctaagaccactccacagaagcgtattgtaaaaggc
aacaagaaacttatgggatcgcaagatattcagtttttcaggcaaagtcgtgagaagaat
cagaggccagcaacaacattagctcccaaaccagcgaagaccaaacagccaagtgaaact
cgcatgccgaaacctacagttgcaagcagcgagagtggtgatttcttaccctctcctcaa
ccagatcctgaccatcagcaggataatgaaaagcctgcatcagaaaccagttctagaggt
gatggggttggaaatgatacaaaactggaatccaagtacttccaggcaagcgacactgct
gatgtcaacatggaggaggaaccaccacctactctgggatcaaaagatgaggatgatgaa
gaatggatgttcctcactcagatggaacccactgacatggaactgtgctctcaaatggag
cagtttgaggaggaaaatgatgaagaactctttcttacccagagagatcccgttgacatg
gacattgatacggatagtgagtccgataccccaggccaaccagtgttggcgcctaaacct
attccagctcctcctggtggaaatgatgatcatttgttcttgaagcctggcatgtcacct
gtgtctcagaaaaaagccaaaccttcaaccacaaaaatatacacccccagctcccgcagt
gcctcgcttgtccttgaaatggagaaaggagcgaagcctcctcctgctgctaatgttgcg
aaagcgaagattccacgacccccaccaatgccacctccaaaaacctttcaacctctccct
actttacaaccaaagccacttcctttacaaccccttcctcctccacaactcccgaagcca
cttcctttacaatcccgccctcctcaacaactcccgaagccacttcctttacaacatact
ccttatgctcctaagttggtcactagttctaaaataagctctacctcagagccaccatct
tacaaggtataccaaagacctgaggctccagttaatgctccagttaacagaccagcaccc
ccgatggatcaaagtccgaagtttgacctttcagtcttgacccaagcaatccttaaatgg
gaatataggatgcttgaaaattacaaagcatttgggagtccaaatgatctgtgccaacta
ccactaaagagagtgccggttcactttcctacctacctggagtacttcaacaccttgtac
cccctgttgctaattaacgcgtttgaagagatggcaaatgaatggctcaaagaggacaga
gtcaagattaacctaacagtccagggaatagaatacagcaatcgcacagctagtgccagc
ttcacggcaagcatttctccggagactgatgctagacagctgtacccaaaagaagaggac
cttgtgctactttggttgccggacaacactggggcatatgcccgcaatgagcctaatttc
catgaaccacatcctcatttcggttatgtctctcggtccaatgtgtccaacagaggttcc
aggtcaatcctgaacttgacaattcagacacgtggtaatgtatcttcagtgaattcccaa
ccggtgtgctgtgaagtcattggatcgctgatcagcatattccgggagttccgtgcgctg
tgttccctgcggagtggaccaatgttgcgtcctcttcttgctccacatgcgtcttatttc
acgcacactctggatagcccaacggacctgggttcaccggagttcaacagggaccaggct
agagcaatagattgtggccttgccatgataaggagaccgcagaagaccccaaaatttctc
cttattcatggtcctccaggaaccgggaagagtaaaaccattggtggcctgttgtacaaa
ctactatcttcgggtataaacagtgctgctcctgctgggaaccaacacaacaagtctcga
cggacacgtgttcttctctgtgcgccctcaaacgctgccatcgacagtctgatgaagaaa
gtcattttgatctttaaagagaaatgccgaaacatcaacgcacctcaaggcaattgcggt
gacataaacctggtgcgactgggaagtgaaaggaccatctcaaagtcactgaagcctttc
agcctcgaccatcagactaaagctagagcacagcgaacccagcaaactgcagaagctgac
atatacaggcggaaggagcaactggaccaaagtattgaaaatctctcccagcgatgtgcg
aagaccaagaaggattctcctgatttcaagaagttgacggagcagaagttgcagcttctg
aaagagagagaaagactgagtcggcagattaaagagtgtcgcagcaggcgacaggaaagt
caagctcatgtgctgcaaaacgctcatgtcatctgctgcacgctcagcaccagtggaagt
actgtcctcgagaatgccttccgtcgtcttgggcatgaacctttcagctgtgtcatcatc
gatgaggctagtcaggctaaagaaaccgagactctgattcctatggtgtaccgaagtcct
gctgtaatccttgttggtgatcccaaccagcttccaccaacggttgtttcccagaaagca
aaggagtttggctacgaccagtctcttatggcaagattatgcaaaaacctttgtcagtca
aacccacaaccttctcccatcctcctgctcagcatgcagtaccgcatgcacccggagatc
tgcgcattcccctccaagtacatctacaacagcgctcttatagacgactggcaggggcag
tgcagacagtatgatcaggagaagacgactgtgacagagtctgaattaagactccccagg
tcactgagaggaccgtgtgtgtgtgagaccgctcagaagcgctgttccaacagctggccc
ttcaggccctacaaagtgtttgacgtgacagatggagcagagaagaaggagagagattca
ttttccaaccacaaagaggtcaagttagtcttgctgctgttgaagatgctgggggagaag
caatcagtgcgagtgggggtcatcacgccctacaacgcccagaaacaacgcataacggaa
gccatcaggggttcaggcatccaacttcaggtggatgtcgatactgtcgatggctttcag
ggcaaagaaatggactgcatcattgtgtcttgtgtgagagccagcaatgaaaatggttcc
attgggtttgttggaaatcgtcagcgaatgaatgtaaccatcaccagagccaaatttagt
ctcttcatactgggacatctacgcacactcagggaacaaagtgattggggagcattgatt
gaggacgcaaggagccgtgaagccataatccaaacaatgcaaaaagatttcgaaagcgac
gtcaggaagattctcaaaccagaacgagagccgctgactcgcagtctctcttatccgcca
gtagagaaaccaagcactgtaacctcacctgttacacacacacctgcggaaacaggcccc
gccccctttccacgcccccaccgcgacgcgagcaacgcacctgtgccacggctaatacct
ctggattgccctaataacccacggatgagtgacaggcccacagacccgcggtttgcaaac
cgacggccaatcagagagcagagaccagacagagatgggcggggcttgccagagtcccac
cgctcgacaaaccgagctaattcgtacgaagccgactctagaagtactggccattcctcc
agatactattccaaacaccgcggttcttcaccgccgagacggcacaggagataa
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integrated database retrieval system
