Labeo rohita (rohu): 127152642
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Entry
127152642 CDS
T09007
Name
(RefSeq) collagen alpha-1(XXIII) chain
KO
K24355
collagen type XXIII alpha
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127152642
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127152642
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127152642
NCBI-ProteinID:
XP_050949382
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Position
21:10108263..10211062
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AA seq
566 aa
AA seq
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MPKMVSTGDSKDVSKTSRCSGHHTSQIFHCLTTLVCFMLSASSVAVCLFMNVKTSHLERK
IELLEMERLSVIQPVHSTLDAHSTLRDAIDKLVQERLKEGVSKIRTAREAAQECSCPPGP
PGKRGRKGNPGIPGTPGRDGYPGPMGMDGKPGPPGPNGSQGMPGLKGDKGDQGDMGPRGP
PAYAASAGLLSNQILTVKGDQGQAGPPGPPGPPGTPGPRGPPGNTGRDGPQGHPGEPGPP
GKDGNEGPRGPPGMQGMNGVNGMPGPQGPVGQKGDKGAPGTEGKRGIDGSPGMKGEKGDV
GDPGPQGLPGEKGATDFTENADLAVRLKTLQGPPGPPGPPGEQGPKGEMGLHGPPGPEGK
QGHKGERGDTGEPGAAGAKGEKGDIGLTGPSGETGQKGDKGDSRLEDNLAQIISLPGPPG
PPGPPGPAGFHGLPGHKGEPGEAVKGEKGEAGEKGPPGQRGLQGFPGSNGLVGLPGAKGE
KGKQGEPGLDGFPGLQGEKGDRGDKGEKGERGTIGKKGLKGQKGEQGPPGLDQPCPVGRD
GLPIPGCWHKEEASGQGDKAKHPSQP
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaatggtttcgactggggattcaaaagatgtgtcaaagacatcacggtgcagt
ggacatcacacatcacaaatattccattgtttaacaaccctcgtttgttttatgctgtcg
gcgtcttcggtggcagtttgtctgtttatgaacgtcaaaacatctcatcttgagcgtaaa
attgaacttctggagatggagcgactgtctgtgattcaacctgtgcactccacactggat
gcgcactcgactcttcgggatgcgatagacaaacttgtgcaagagagacttaaagagggg
gtgtcgaaaattcgcacagctcgagaagcagcgcaagagtgctcgtgtcctccaggtcct
ccaggaaaacggggaagaaaaggcaaccctggaattccaggcactccaggacgagatggc
tacccgggtccaatgggtatggatggtaagcctggacctccaggtccaaacggcagtcag
ggaatgccagggctgaaaggagataagggtgaccagggagacatgggtcccaggggacca
ccggcctacgctgcctctgcaggcctgctcagtaatcagattctcacggttaagggtgat
caaggtcaggctgggcccccgggtcccccaggacctccaggaacacctggtcccagaggg
cctccaggaaacacaggcagagatgggccgcagggccacccaggagagccgggtcctcct
ggaaaagatggaaatgaggggccgagagggccacctggcatgcagggtatgaatggtgtc
aatggcatgcctggcccacagggccctgttgggcaaaagggcgataagggcgctccaggt
actgaggggaagagagggattgatggatccccaggcatgaagggtgaaaagggggatgtt
ggagatccaggaccccagggtttgcctggagagaaaggagctactgactttacagaaaat
gctgatctggctgttagactcaaaactctacaggggcctccaggccctccaggacctcca
ggggagcaagggccaaaaggagaaatgggcttacatggaccaccaggacctgaaggaaag
cagggccataagggagagagaggtgatacaggagagcctggagcagcaggagcaaaaggg
gaaaagggggacattgggctgacagggccttcaggggaaacagggcaaaagggcgataaa
ggagactctaggcttgaggacaatctggcacagattatctctttgcctggcccaccaggg
ccacctggaccccctggacctgcaggatttcatggattgcctggacacaagggagagcct
ggtgaggcagtcaaaggcgaaaaaggtgaagctggagagaaaggtccacctgggcagcgg
ggtcttcaaggctttccagggtcaaatggcttggtaggcttgccaggtgcaaaaggtgaa
aaggggaaacaaggtgaaccaggtttagatggtttcccagggcttcaaggagaaaagggg
gacagaggagacaagggggagaagggtgagagaggcacaataggaaaaaaaggtctgaaa
ggacagaagggagagcagggacctccagggcttgatcagccttgtcctgtggggcgcgat
gggctgcccataccaggatgctggcataaggaagaggcttcagggcagggtgacaaagcc
aagcacccatctcagccctaa
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