Labeo rohita (rohu): 127152709
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Entry
127152709 CDS
T09007
Symbol
cacna1bb
Name
(RefSeq) probable voltage-dependent N-type calcium channel subunit alpha-1B isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04010
MAPK signaling pathway
lroh04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
127152709 (cacna1bb)
04020 Calcium signaling pathway
127152709 (cacna1bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127152709 (cacna1bb)
Ion channels [BR:
lroh04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
127152709 (cacna1bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
127152709
NCBI-ProteinID:
XP_050949483
LinkDB
All DBs
Position
21:21891533..22026947
Genome browser
AA seq
2336 aa
AA seq
DB search
MSRMARFGDDLPTRYGGPAGAGRGGARAGGPSGGQRMYKQSMAQRARTMALYNPKQTKQN
CFTVNRSLFIFSEDNVIRKYAKRITEWPPFEYLILTTIIANCIVLALEQHLPAMDKTPMS
ERLDDTEPYFIGIFCFEAGIKIIALGFVFHKGSYLRNGWNVMDFVVVLTGILTTVGSQFD
LRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVMFAIIGVEFYMG
KFHFTCFKVDTGEKVSDYPCGAERPSRVCPNGTECREYWTGPNFGITNFDNILFAILTVF
QCITMEGWTDVLYHANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEK
RQEFLKLRRQQQIERELTGYLEWICKAEEVLLAEEDQNAEEKSPLDGAWYRRKQNNPVLK
RTKSRKGRNDLISAEEGEEHFTDISSVAPPGSPFARASLKSSKNDSSSYFRRKEKRIRFF
IRRMVKAQSFYWIVLCLVGLNTMCVAIVHYDQPEWLTKALYLAEFVFLGLFLTEMTLKMY
GLGPRNYFHSSFNCFDFGVIVGSIFEVVWAAIQPGASFGISVLRALRLLRIFKVTKYWNS
LRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDSFPAAIM
TVFQILTGEDWNAVMYHGIESQGGVRGGMFSSVYFIVLTLFGNYTLLNVFLAIAVDNLAN
AQELTKDEEEQEEAAKKSMALQKAMEVKEVSPMSAANISIAAFVKQNRDEISRRSSVCSV
HSLKEQQRSLQKMSIWEQRTTQLRRHNLRNSSEALYNELEPEERLRVSSALHLRPDMKAH
HDRPLVVEHRDGTAENSRTDGDGDTPDCQPSSGHPRKHHRCRGENGDAGEGRHHRHHSRN
REHQGGLEHSSNQDGGHRNHHTAGSPEEGIGMGEREHRHHHSRRSREVNGNGNGNGTIGN
GGRGEGRIRGHREGEGGNGERRRQRPRGKAQSTLDGEDCRENGGKHRGRPTGTDSLATSP
LQSPSEEKPEDKDNLKNSTRMGPTGINIPVTITAPPGETTVIPMNNIDGDSLLLNEEKKD
LDELNQNAPKHILPYSSMFVFGPNNPVRRLCHYVVNLRYFEMCILTVITMSSIALAAEDP
VQANAPRNDVLKYLDYVFTGVFTFEMVIKMIDLGLLLHPGSYFRDPWNILDFIVVTGALV
AFACSGTKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYILF
MFIFAVIAVQLFKGKFFHCTDESKALEKDCRGQFLEYGSDGVAMTQPREWKKYDFHYDNV
LWAFLTLFTVSTGEGWPTVLKHSVDATYEDQGPSPGYRMETSIFYVVYFIVFPFFFVNIF
VALIIITFQEQGDKAMSECSLEKNERACIDFAINAKPLTRYMPQDKQSYQYKIWKFVVST
PFEYSILTMIAVNTVVLMMKFHGAPKPYEDMLKWLNIIFTALFTLECILKVIAFGPLNYL
KEAWNIFDFVTVLGSITDILVTEIKDKRINLSFLRLFRAARLIKLLRQGYTIRILLWTFV
QSFKALPYVCLLIAMLFFIYAIIGMQVFGNIMLSEESAINIHNNFQTFFQALMLLFRSAT
GEAWHEIMLSCLSERPCDHDSGYTGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNF
EYLTRDASILGPHHLDEFIRVWAEYDPAACGRISYLDMYEMLRHMSPPLGLGKKCPPRIA
YKRLVRMNMPIAEDNTVHFTSTLMALIRTALEIKLASGVLAQRLCDAELRKEINRIWSNL
STKTVDLLVTPHKHNELTVGKVYAALMIFDYYKQNRAKRLQQQQAAPGTQSKVGVLFRPM
LPLTHLHDQQPLVPKALPSSQSDTTPQPDAPPTSFHLTNGDAVQSQSSAMSKSLSGDISQ
EVAQEANRRPVQRGQSEDVPNTYRSQELVEMTDIENDSDVGGYLVLEGHGRAASMPRLNA
GFQRSHLRHTAGTYLAPIADVSPMRRSTSSLTPQRGVREVNLSDYDLERPKLAPGQTLAQ
ERERERAHHHHHHHHHRCQRRRDKKHKSLDRAISEEQPPPAADPNTESLPRERARERDRG
RSHERKHHSSSAVERKQRYYSCDRYGSHEQGHSVSAGPSRSTSPGEPHDPNRLKQGINTA
KGTSVVHTSGTSTPCRGRRQLPQTPLTPRPAVAYKTANSSPVQLNTAQSAGPCPTRLSRG
LSEHDALLSGSTHRQSPVPVTRIGSDPNLGPLQQDSNLSEADDFHDALSTYGTGRSPRTA
ASFVHTSSGAAPTSTLLSRSQSGVPNGYHYSLGVNAAPGSSRASGSYQETERDDWC
NT seq
7011 nt
NT seq
+upstream
nt +downstream
nt
atgtctaggatggctcgctttggagacgatctgcccacccgctatggaggtccagcgggc
gccgggagagggggagcccgggcgggaggtccctcgggcggtcaaagaatgtacaaacag
tcgatggctcaaagagccaggacaatggctttatataatcctaaacaaaccaaacagaac
tgcttcactgtcaaccgctctttgttcatcttcagtgaggacaatgtcatcaggaaatac
gctaaaagaataaccgaatggcctccatttgagtacctgatcctcaccaccatcatcgcc
aactgcatcgtactggccctcgaacagcatctccccgccatggacaagacccccatgtct
gaacgcctggacgacacagagccctactttatcggaatattctgtttcgaggccggcatt
aagatcatcgccttgggctttgtgtttcacaaaggctcttacctccgcaacggctggaac
gtaatggactttgtggtcgttctgacagggatcttaaccacagtgggttcacagtttgac
ttaaggacgttgcgcgccgtcagagtactgcgacccctcaaactggtgtctggaatccca
agtcttcaagtagtattaaagtccattatgaaggccatggttcccctgcttcagattgga
ctgctgcttttcttcgccatcgttatgtttgccatcatcggtgttgagttctacatgggc
aaatttcatttcacctgctttaaagtggatacaggagaaaaagttagtgattacccatgt
ggagcagaacgtccctcaagagtgtgtcccaatggaacagaatgtagggagtactggaca
ggacccaacttcggcatcacaaatttcgataacatcctcttcgccatcctcacagtcttc
cagtgcatcaccatggaaggatggactgatgtgctatatcatgccaatgatgcctcggga
aacacttggaactggttgtacttcatccctctcatcatcatcgggtcctttttcatgctt
aacctcgtcctgggtgtcttatcaggggagtttgcgaaagaaagagaacgagtggagaag
aggcaggagttcctgaagctccgcagacagcaacagattgagagagaactcaccggctac
ctggagtggatctgcaaggcagaggaggtgttgctggcagaagaggatcagaatgctgag
gagaaatcccctctggatggtgcgtggtacaggaggaaacagaacaacccagtcctgaaa
agaacaaagagcagaaagggtagaaatgaccttatcagtgctgaagagggagaggagcat
ttcacagacatctcctctgtcgcaccacctggatcaccttttgcccgagctagcctaaag
agcagtaagaacgatagctcctcatatttccgtcgaaaggaaaagaggatacgctttttc
attcggcggatggtgaaggcacaaagtttctactggattgttctttgtttggtgggattg
aacacaatgtgtgtggccatcgtccattacgaccagcctgagtggctcaccaaggccctg
tacctggcagagtttgtattcctgggtctgtttctgacagagatgactctgaagatgtac
ggcctggggcccagaaactactttcactcctcgttcaattgttttgacttcggggtgatt
gtgggaagtatatttgaggtggtgtgggcagcgatccaacctggtgcatcttttgggatc
agtgttttgagagccctgcgcctgctccgtatttttaaagtgaccaagtattggaactct
ttgcggaatcttgtggtttcactgttaaattccatgaagtccatcattagcttgctcttc
ctcctcttcctcttcattgtggtgtttgcgctgctaggcatgcaactcttcgggggccag
tttaattttgaagatgaaactcccactacaaactttgacagcttccctgcagccataatg
acagtcttccagattttgacaggagaggactggaatgcagtgatgtatcatgggatagag
tcccagggtggcgtccggggtggaatgttctcctcggtctacttcattgtccttacgctg
tttggaaactacacacttctgaatgtattcttggccatcgctgtggataaccttgccaac
gcacaggagctcacaaaggatgaagaggaacaagaggaggcagcgaaaaagagcatggct
cttcagaaagccatggaggtgaaggaggtcagccccatgtctgctgccaacatctcaata
gcagcttttgtaaagcaaaatcgagatgaaatctctcgcaggtcttcagtctgcagcgtt
cactcacttaaggagcagcagaggtcactgcagaagatgtccatatgggagcagcgcacc
acccagctgcgcagacacaacctgcgcaacagcagcgaggccctttacaacgagctagag
cctgaagagcgtctgcgcgtgtcttcggcgctccatctgcggcccgacatgaaggcccac
cacgatcgtccactggtggttgagcacagagacggcactgcggaaaattccagaactgac
ggagatggagatactccagactgtcaaccttcctccggccacccaaggaagcaccatcga
tgtcgaggagaaaacggagatgcgggagaagggcggcaccatagacaccacagcagaaac
agagagcaccagggtggcttggaacacagcagcaatcaagatggaggacacaggaaccac
cacacagctggttctcctgaggagggcatagggatgggggagagagaacacagacaccac
cattctcgcagatccagagaggtcaacgggaacggcaacggcaacggcacgattggtaat
ggaggcagaggcgagggtaggatacgaggtcacagggagggcgaaggagggaatggagag
aggagaagacaacggccacgtggtaaagcccagtccacactggatggagaagattgcagg
gagaatggtggaaaacacaggggaaggccaacaggaacagacagcctagccaccagccct
ctccagtctccttctgaagagaagccagaagataaagataatctaaaaaacagcaccaga
atgggcccaactggaatcaacatccctgtcaccataactgccccaccaggagagactaca
gtcattcccatgaacaacattgatggtgacagtttactgctgaacgaggaaaagaaggat
cttgatgagctgaatcagaatgcgcccaaacacattctgccgtacagctccatgtttgtg
ttcggtccaaataacccagtgagacggctgtgtcattatgtggtgaacctacggtatttt
gagatgtgtatcctcacagtcatcaccatgagcagcatcgctctcgctgctgaagaccct
gtgcaggccaatgccccgcgcaatgatgtgctgaaatacctagattatgtcttcactggt
gtgtttacgtttgagatggttataaagatgattgatcttgggctgttgttgcatcctggg
tcttacttcagggacccgtggaacatactagacttcatcgtagtcaccggcgctctggtg
gccttcgcctgctcaggaactaaagggaaggacatcaacaccatcaagtccctaagggtc
cttcgagtactaaggcccttgaagaccattaaacgcttgcctaaactcaaggccgtgttt
gactgcgtggtgaactctctgaaaaatgtgctcaacatcctcatcgtttacatcctcttc
atgttcatcttcgccgttattgctgtgcagcttttcaaggggaagttttttcactgcact
gacgagtccaaagccctggagaaggactgcaggggtcagttcctggaatacggcagtgat
ggagtggccatgacgcagccgcgcgagtggaagaagtatgatttccattatgacaacgtc
ctgtgggcctttctgaccctgttcactgtctccacaggagaaggctggccaacagtgctg
aaacactctgttgatgccacgtacgaagaccaaggtcccagtccaggttaccgcatggaa
acctccatcttctatgtggtctacttcatcgtcttccccttcttctttgtcaacattttt
gtggctttgatcatcatcacgttccaggagcagggagataaagccatgtcggagtgcagc
ttggaaaagaacgagcgagcttgtattgactttgccatcaacgccaaacctctgactcgc
tacatgccacaggacaagcagtcttatcagtacaagatatggaagtttgtggtgtccact
ccatttgagtactccatcctgaccatgatcgctgtcaacacagtggtcctcatgatgaag
ttccatggtgctcctaaaccgtatgaagacatgttgaagtggctgaacatcatcttcacg
gctctcttcacgctggagtgcattctcaaggtcatcgcctttggccctctgaactaccta
aaggaggcatggaatatttttgactttgttactgtactgggcagcatcactgacatcctg
gttactgagatcaaggataagaggattaatcttagtttcctgagactcttccgggccgct
cgtctcattaaactcctccggcagggctacaccattcgcatcctgctctggacctttgtt
cagtcctttaaggctctgccgtatgtgtgtctcctcattgcaatgctcttcttcatatat
gccatcattgggatgcaggtgtttggtaacatcatgctgtccgaggagtcggctatcaac
attcacaataacttccaaactttttttcaggccctcatgttgttgttcaggagcgctaca
ggggaggcttggcatgaaattatgctgtcttgtctgagcgaaaggccatgtgaccatgac
tctggctatactggaaaagagtgcgggagtgatttcgcttacttctactttgtctctttc
atcttcctttgttccttcctgatgctgaatctgtttgtcgccgtcatcatggataacttt
gagtacctgacacgtgacgcttctattctcgggcctcatcaccttgacgagttcatccgt
gtctgggctgagtacgaccctgccgcctgtggacgcatatcctacctcgatatgtacgag
atgctacgccacatgtcccctccactaggtttgggaaagaaatgtcctccacgaatcgcc
tataagcggttggtgaggatgaacatgcccatcgctgaagacaatacggttcactttacc
tccactttaatggctctcatccggaccgcgctggagattaaactggcgtcaggcgttctg
gctcagcggctttgtgatgctgagctaaggaaggaaataaatagaatttggagtaacttg
tctacaaaaacagtggacctgctggtgacacctcataaacataatgaactgactgtgggg
aaggtctatgctgctctgatgattttcgactactataagcagaaccgagccaaaagactc
caacagcagcaggctgcaccaggcacacagagtaaagttggagttctcttcagaccaatg
cttcctctcacacacttacatgatcagcagccactagtgccaaaagccctgccctcttct
caatcagataccacaccacagcccgatgccccgcccacatcctttcacctgaccaatggg
gatgcagtacaaagccagagcagtgccatgtcaaagtctttatcaggagacatatctcag
gaagtcgcgcaggaagcaaacagaaggcctgtccaacggggccaatcggaagacgtgcca
aacacatacagatctcaggaattagttgagatgactgacattgagaatgactctgatgtg
ggcgggtatcttgtgctggagggtcacggcagagctgcctccatgcccagactcaatgct
ggctttcagcggagccacttacgccacaccgccggaacgtatctagcacctatcgcagac
gtgagtcccatgcggcggtctacgtcctcgttgactcctcagagaggggtgcgagaggtc
aatctgagcgattatgacctggagaggcccaagctggccccgggccagaccctcgctcag
gagagagagagggagagagctcatcatcatcatcaccatcatcatcaccgctgtcagcgg
cgcagagacaagaagcacaaatcgctggatcgagccatcagcgaagagcagccaccgcct
gcagcagatccaaacactgagtcactgcctagggaacgagcacgggagcgagaccgcggc
cgttcccatgagaggaagcaccattcatcctcagcggtggaaagaaagcagcgatactac
tcatgcgaccgctacggcagccatgaacaaggccacagcgtgtccgccgggcccagcaga
tccacatcgccaggagaaccccatgacccaaacaggcttaaacagggaattaacacagct
aaaggaacttcagtcgttcatacctcaggcaccagcacaccctgccgcgggcgtagacag
ctcccacagacgcctcttacccctcggcctgctgttgcctacaagactgccaactcctct
ccggtccagctcaacactgcccagtctgcagggccctgccccactcgccttagtcgtggc
ctgtcagagcacgatgccctactcagcggtagcacccaccgccaatctcccgtgcctgtc
actcgtatcggctctgaccccaacttaggtcccctccagcaagactcaaacttgtctgaa
gcggacgacttccacgatgccttgagcacgtacggcacgggtcgctcccccaggactgca
gcctccttcgtccacacatcatcaggtgccgcccccacttccacgctgctctcgcgcagc
caaagcggagtccccaacgggtatcactattccctcggagtgaacgctgcacctgggtcg
agtcgagcatctggaagctaccaggagactgagagagatgactggtgttag
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integrated database retrieval system
