Labeo rohita (rohu): 127152886
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Entry
127152886 CDS
T09007
Symbol
smarcb1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1b
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03082
ATP-dependent chromatin remodeling
lroh03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127152886 (smarcb1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
127152886 (smarcb1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lroh01009
]
127152886 (smarcb1b)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127152886 (smarcb1b)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127152886 (smarcb1b)
Protein phosphatases and associated proteins [BR:
lroh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127152886 (smarcb1b)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127152886 (smarcb1b)
SWI/SNF complex
127152886 (smarcb1b)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127152886 (smarcb1b)
PBAF complex
127152886 (smarcb1b)
SWI/SNF complex
127152886 (smarcb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
127152886
NCBI-ProteinID:
XP_050949724
LinkDB
All DBs
Position
21:complement(21214217..21224251)
Genome browser
AA seq
366 aa
AA seq
DB search
MALSKTFGQKPIKFQLEQDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKI
VASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKAKRNSQWVPTLPNSS
HHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILDEQTD
QRVIIKLNIHVGNISLVDQFEWDMSEKENSPETFALKLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLA
NTAPAW
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgagtaaaacatttggacaaaaaccaataaaatttcaactcgagcaagatggg
gatttttacatgataggttcagaggttggaaactacctgcgtatgtttagaggctctctt
tataagcggtacccgtcactatggagacgtctcgcatccgtggaggaaaggaagaaaatt
gtagcatcatcacacgccaccagtgtgaccctgctgaaggcgtctgaatgtgaggagatc
ttcgaggggaatgatgagaagtacaaagcagtgtccatcagcacagagcctccggcgtac
ctcagggagcaaaaggcaaagaggaacagtcaatgggtgcccaccctgcccaacagctcc
caccacctggacgcagtgccttgttccaccactatcaacagaaaccgaatgggacgtgac
aagaaaaggacctttccgttatgttttgatgaccacgaccctgcagtcatccacgaaaat
gcttcccaggcagaggtcctggtgcctatccgcctggacatggagattgatgggcagaag
ctcagagatgcctttacctggaacatgaacgagaaacttatgactccagagatgtttgct
gagatcctgtgtgatgacctggacttgaatcctcttaccttcgtccctgccatcgcctca
gccattagacagcagatcgagtcttaccccaccgacagtattttggatgagcagactgac
cagagagttatcattaagctaaacattcatgttgggaacatctctctggtggaccagttc
gaatgggacatgtcagagaaagaaaactcgccagaaacattcgctttaaagctctgttct
gaactgggtctcggaggagagtttgtcaccaccattgcctacagcatccgaggacagctc
agctggcaccagaggacgtacgccttcagtgagaacccattaccaacggtggagattgcc
atcaggaacacaggtgatgccgaccagtggtgccctctgctggagaccctgacagatgca
gaaatggagaagaaaatcagagatcaggacagaaacacaaggcgtatgcgacgacttgcc
aacaccgcccctgcctggtaa
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