KEGG   Labeo rohita (rohu): 127152964
Entry
127152964         CDS       T09007                                 
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03030  DNA replication
lroh03410  Base excision repair
lroh03420  Nucleotide excision repair
lroh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    127152964 (rfc2)
   03410 Base excision repair
    127152964 (rfc2)
   03420 Nucleotide excision repair
    127152964 (rfc2)
   03430 Mismatch repair
    127152964 (rfc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lroh03032]
    127152964 (rfc2)
   03036 Chromosome and associated proteins [BR:lroh03036]
    127152964 (rfc2)
   03400 DNA repair and recombination proteins [BR:lroh03400]
    127152964 (rfc2)
DNA replication proteins [BR:lroh03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    127152964 (rfc2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    127152964 (rfc2)
Chromosome and associated proteins [BR:lroh03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    127152964 (rfc2)
DNA repair and recombination proteins [BR:lroh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     127152964 (rfc2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    127152964 (rfc2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 RCF1-5-like_lid AAA_14 AAA_16 Rad17 Mg_chelatase Viral_helicase1 AAA_24 RuvB_N AAA_11 AAA_assoc_2 AAA_19 nSTAND3 AAA_18 MipZ DNAX_ATPase_lid ABC_tran AAA_5 AAA_28 AAA_23 AAA_25 AAA_30 MeaB SLFN-g3_helicase NTPase_1 RNA_helicase FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 127152964
NCBI-ProteinID: XP_050949831
LinkDB
Position
21:14221434..14227521
AA seq 353 aa
MDVEMKEADSEQSQTDRPPKKDDTAPKPSTNAYELPWVEKYRPQKLNEIVGNEETVSRLE
VFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIK
MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI
QSRCAVLRYSKLRDDQIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQSTNS
GFGYINSENVFKVCDEPHPLLVKSMLEHCVNANIDEAYKIIEQLWSLGYSPEDIIGNIFR
VCKTFQMAEYLKLEYIKEIGYTHMKVAEGVNSLLQMAGLLGRLCSKTAAPDAS
NT seq 1062 nt   +upstreamnt  +downstreamnt
atggatgttgaaatgaaagaggcagacagtgagcaaagtcaaaccgacagaccgcctaaa
aaggacgatactgcaccgaaaccctcaacgaatgcttatgaactaccatgggttgaaaaa
tacagacctcagaagttgaatgaaatagttggaaatgaagaaactgttagcagactggag
gtgtttgcaagagaaggaaacgtgcccaacatcatcattgctggtcctcctggcactgga
aaaacaaccagcattttgtgtttggctagagctcttcttggtccagccatgaaagatgct
gtgcttgagctgaatgcctcaaatgaccgtggaattgatgttgtgagaaacaaaataaaa
atgtttgcccagcaaaaggtcacactccctaaaggtcgacacaagattataatcttggat
gaggctgacagcatgacagatggagcccagcaggctctcagaagaaccatggagatctac
tccaaaacgacacgctttgcactggcatgtaatgcgtcagataagatcatagaacccatc
cagtcccgctgtgcagtgctgcgttacagcaaactcagagatgaccagattatgatgcgt
ctgacagaggtggtagagaaggagaacttacatgtcaccaatgatggcctagaggccatt
atcttcactgctcaaggggacatgagacaggctctgaataacctgcagtcaactaattct
ggatttggttacatcaacagtgaaaatgttttcaaggtgtgtgatgagccacatcctctg
ctggttaaaagcatgctggaacactgtgtcaatgccaacattgatgaagcctacaagatt
attgagcagctttggtcactcggatactcaccggaggacatcatcggaaacatctttaga
gtgtgcaagacctttcagatggcagaatatttgaagctggaatatattaaggaaattggc
tacacgcatatgaaagtggcagaaggggtgaactctctgttacagatggccgggctgctg
ggtcgcctgtgcagcaagacggctgcacctgatgcaagctaa

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