KEGG   Labeo rohita (rohu): 127153149
Entry
127153149         CDS       T09007                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh04115  p53 signaling pathway
lroh04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    127153149 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    127153149 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lroh04121]
    127153149 (cop1)
Enzymes [BR:lroh01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     127153149 (cop1)
Ubiquitin system [BR:lroh04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    127153149 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     127153149 (cop1)
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_EIPR1 WDR55 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 zf-RING_2 Beta-prop_EML zf-RING_UBOX Beta-prop_DCAF4 zf-C3HC4_3 Beta-prop_WDR90_POC16_2nd zf-RING_5 zf-C3HC4_4 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 Beta-prop_DCAF12 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st zf-RING_10 WDR90_beta-prop_4th zf-rbx1 UvrD-helicase zf_C2H2_10 Sina_RING Terminase_2 Prok-RING_4
Other DBs
NCBI-GeneID: 127153149
NCBI-ProteinID: XP_050950061
LinkDB
Position
2:23833756..23850147
AA seq 691 aa
MSSTRQQQQQQSGGAAGSVPGTSSGSMSSSSGSGAGGANSGSSGAQNGNSSGNGVSSRTL
GSVAEGPSARMGSSRKRPLYNGLINPYEDKSNDFVCPICFEMIEEAHMTKCGHSFCYKCI
RQSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRSEEKRLKRDHPNGTKWQVFQD
VLGADQENMDLANVNYILEYLLQKKKQLEAESQAAQRQILMEFLKEARRNKREQLEQLQK
ELNFLEEDIKRVEEMSGMYTVSEMDPNLDSTVPQFEAPSPAPSSSIIDPTEYMQHPFGGS
SQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRMSRITDDSRTVNQLDDFMECLSKFT
RYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVFEYGTVIQDAVDI
HYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVD
FNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCV
HYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVNKPHCLRSFKGHI
NEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDKKEDDTNEFV
SAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgtcaagcactcggcagcagcaacagcagcagtctggcggtgcagcggggtccgtcccc
gggacgagctctggaagtatgagtagcagtagcggcagcggcgccggtggagcgaacagc
gggagcagcggcgctcagaacgggaacagctcgggtaacggggtgtcctcgcggactctg
ggctcggtagccgagggaccgagcgctcgaatgggctcaagcaggaaaagacccttgtat
aacggtctgatcaatccctatgaggacaagagtaatgattttgtatgccctatatgtttt
gagatgatagaggaagctcacatgacaaagtgtggccacagtttctgttataaatgtata
cgacagagtttggaggacagcaacagatgcccaaaatgtaattatatcattgataatgtg
gatcaactgtaccccaacttcttagtgaatgaactgatcctaaaacaaaaacaaagatct
gaagaaaagcgtctgaaacgggatcaccctaatggaaccaaatggcaggttttccaagac
gtccttggtgcagatcaagaaaatatggatttagcgaatgtcaactacatattagagtac
ctgttgcaaaaaaagaaacagctggaggcggaatcacaagctgctcagcgccagatctta
atggagttcctgaaagaagccagaagaaataaaagagagcaactggagcagttgcaaaaa
gagctgaactttttagaagaggatattaaacgagtggaggaaatgagtggtatgtacaca
gtgagtgaaatggaccccaatttagacagcactgtaccccagtttgaagctccatctcct
gcacccagcagtagcataatagaccccacagaatacatgcagcatccttttggtggaagc
tcacagggtaaaagacaaacttggtacaacagcactctggcgtcacgacgaaagagactg
acggcacactttgaagatctggagcagtgttatttctctaataggatgtctcgaataacg
gatgacagcaggactgttaaccaactggatgatttcatggagtgtctctcaaaatttacc
cgttacaactctgtgaggcctctggccaccctgtcgtatgctagtgacctctataatggc
tccagtattgtgtccagcattgagtttgaccgtgactgtgattactttgccattgccggt
gtcactaagaaaattaaagtgtttgagtacggcactgtgatccaggatgctgtggacatt
cattatcctgtcaacgagatgacatgtaactctaaaattagctgtatcagctggagtagc
taccacaaaaatctgttagcaagcagcgattatgaggggactgtcattctttgggatggg
ttcacgggacagaggtcaaaagtctaccaggagcatgaaaagcggtgttggagtgtcgat
ttcaaccttatggatcccaagctcttagcatcaggatcggatgacgcaaaagtcaagttg
tggtccaccaacctggacaattcagtagccagcattgaagcgaaggccaacgtatgctgt
gttaagttcagtccatcctctcgatatcaccttgccttcggttgtgcagaccattgtgtg
cactactatgacctgagaaacactaagcagcccatcatggtttttaaaggccacaggaaa
gcagtgtcctatgccaaatttgtcaacggagaagagattgtgtctgcatcaacggacagc
cagctgaaactctggaacgtgaacaagccacattgtttgcgctccttcaaaggacacatc
aacgagaagaactttgtgggtctggcatctaatggagactatgtagcatgtggaagtgaa
aacaactcgctgtacttgtactacaagggcctctcaaagacgctgctgactttcaagttt
gacactgtgaagagtgtcctggacaaggacaagaaagaggacgacaccaatgagtttgtc
agtgcggtgtgctggcgagcgctacctgatggggagtcaaatgtgttgattgcagccaac
agtcaaggaacaatcaaggtacttgagctggtctga

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