Labeo rohita (rohu): 127153463
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Entry
127153463 CDS
T09007
Symbol
slx4
Name
(RefSeq) LOW QUALITY PROTEIN: structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
127153463 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127153463 (slx4)
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127153463 (slx4)
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
127153463 (slx4)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
127153463 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2_6
Zn-C2H2_12
zf-C2H2_4
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
127153463
NCBI-ProteinID:
XP_050950474
LinkDB
All DBs
Position
22:complement(24038693..24049322)
Genome browser
AA seq
1762 aa
AA seq
DB search
MDDSDQDFTDLCSRLLKRVRKKGPGSGDEKRSAAKDEEPSSPSSKRNPLKRRKKTRDASK
TEINSKINGRTQTVTLETGDASQPVPKVSGTEKVKDVVIRRMQRFKRNSPERLQHAHTNQ
TTTELDGNCPTPAGIRHSEDVSGDEALALQLQQELDREARASGNVEDEGLFFCQLCQKDL
SAMSPSLRTQHINRCLDASESSAPSASHHSQPRPRVPECPICGKSFQSEKSRSAHLKRCS
TDLGVKPNDLVLALRRQAAETPSDSTTNQSQQIVSGTTARKDGIPVKKKTRRKAQKLDED
TMMALALSRSLLEQEMEKKRELEEEREMLAQLSSPPATVAPVLHWKPGAGKGRGKRRKGA
SPVHPPLLLIQDPQTALNRLQERVSSLLLHSRPPSPPTPTLSASALPLHSHAXPLWDKSA
LRGGGPDSISEFYTSELSNFIQPWVAPEREKVKSLEVTPVKKPPAVSSDSVQEKLLDQSP
AQHRTTRPLTPCSGTPGSQALQDLVELAEEGMTLTQYGYTASAPTGDKSVKDSAVNELPS
SGFVPETNDKKTPKKSSVYVLKLASDLSSMVNNPQLSDVQLQVDSGDVFFTHSFMLYTRC
PLLANMVHDSGFGVQEEGMPVAQRVLLGNVLGEAVLALLQYLYTAHCPLTDTLLPHMQEL
ADRFGLPELQQQCEEYSGSVEENPRGMFPDPEPHLGDQEDQKMAESNFLELLQSMWQHGD
SEEEDDFKETAGEERDMEEEQETGDGEEEDRVDEEELDEIYEFAATQRKMETMLETATET
EEEEGDANASLGNEKKDKGKEKNESESLSEKSAGSCHSNKQGVDGTEAAMVTSPNPDLET
ERVCLIPELDENTDPDASLDKSYDHLFSQSVGEYMEPSQTPASCSQQQQNKPSRTPQLNK
PAPFRPSCVSEVIDLSISPPPSSNVSGETSFPMPGVSPVPHEGENRSPLTKGNSGSQRIE
NPKSPSESQSKQVELIVLSDSGDEMEVDGGHSAEHAFESPSEPPQTFTSYACKVSENSFK
ESGSQGLASKQVNASKQVETRIEAKSDHSEQRSPGIANESAFDGSAEVSWLIPATPVPST
RCSSAQTCISMRRTQLFPKSSSSSSSSSVSDSLKPASFGSSIKPVPLPKFHKSDQSPSKE
LRSTDTDCSPGYQRPLHHLRLSQVPSTDVSHSSHIDTVMRRPTQGVPKPSSSTPLHSDSS
LQRQIPFGSPMVDDCEVRLRHSKDNSRSFGSQVKVGLMSLQLSSSSSSKTPEKMQSSSPP
QGCSSPSTNSQSYSCPERSRESENNGIEGMELGENPNQSVEELVEIGENSFCDMDGFGRG
VGEENSNQSVEELVEIAGNSLNDMDEPKRRDESPNQSVDENDDIAGNSCDIDGSRRGVVE
ENPNHSVDEVVAAGNSYCEMDEPPIAFDDSWGLNGGVGSQKPRFSLRLDSSEGTVSPPGL
ESKGPMFTSPLASGACNKTPDPSPGPLNHSLPHPDMWDDWEEEEVAPLPLSQRLAAPSAK
RVAELKTPVACRKRDKAPLVPITPMPGFSDMDTPELKNRLNRFGVRPLPKKQMVLKLKEI
HHYTHQLQSSESEEETSGPQRPPNASNSRSALLSFKQPTAPSSVSPVKLLPSEEDELLSA
SQNSNTSSTAESDRSNPELCVSEDDDSDNEGITASQAVVREKDKLLAVRQFILSDPKLYA
QVLQYQPLSLAELQSSLKAAGIRLGAAKLLDFLDSQCITFSTAKQGQNASSRRKRRVKTA
TNAAGAAGRGRKKSSKPNGGIA
NT seq
5289 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcggatcaggacttcaccgacctgtgttctcgtctcctcaaaagagtgagg
aagaaaggaccaggatcaggagatgagaaaagatcagcagccaaggatgaagagccatcc
tcaccctcttctaaacgaaaccctcttaagaggagaaagaagaccagggatgctagtaag
actgaaataaacagtaagatcaacggcaggactcagactgtgacgttagagactggtgat
gcttcccagcctgttcctaaagtgtcaggcactgagaaggtcaaagatgtagtgatccgg
agaatgcagcggtttaagagaaacagtcctgagaggctccagcatgcacacaccaaccaa
acaaccacagagcttgatggaaactgtcccacccctgctgggatccggcactctgaggat
gtgagcggtgatgaagccctggctcttcagctgcagcaggagttggaccgtgaggctcgg
gcctctggaaacgtagaagatgaaggattgttcttctgccagctctgtcagaaagatctg
tcagccatgagcccctcgctacgtactcagcacatcaacagatgtctagatgcaagcgag
agcagcgctccttcagcatcccatcattcacagcccagaccacgggttccagagtgtccc
atttgtggaaagagttttcagtcggaaaaaagccgttctgcccacctaaagcgttgctcg
actgatttgggtgtgaaaccaaatgatcttgtcctggctttaaggagacaggctgctgag
actccaagcgacagcactaccaatcagtcacagcaaatagttagtggtaccacagctagg
aaggatggcattcctgtaaaaaagaaaacgaggaggaaagcccagaagttggatgaggac
accatgatggcactggctctgtcccggtctttactcgagcaggaaatggagaagaagcga
gagctggaggaagagagggagatgctggctcagctctccagtcctcctgcaactgtggct
cctgtcttacattggaaacctggtgcaggtaagggccgtgggaagagaaggaaaggagcg
tctcctgtccatccaccacttcttctcatacaggaccctcagacagcactgaaccgtcta
caggagcgggtttcatctcttctgcttcattccagacccccttctccaccaacaccaact
ctctccgcttccgctctccctcttcattctcacgccnnccccctctgggacaaaagtgct
cttcgtggaggaggaccagactcaatttcggagttctacacctcagagcttagcaacttt
atacagccatgggttgcaccagagagagaaaaggttaagtctcttgaagtaactccagtc
aagaaacctccagctgtgagctcagattcagtccaggaaaagcttttagatcagagccca
gcacaacaccggactacccgtcctctcaccccctgttcgggtacaccaggcagccaggct
ttgcaggacctggtggagcttgcagaggaaggcatgaccctcacccagtatggatacaca
gcatctgcgcccacaggggacaagtcagttaaggacagtgctgtgaatgaacttccctcg
agtggatttgttccagagactaatgacaagaagacacccaagaaatcctcagtgtatgtt
ttaaagctagcgtcagatctgagcagcatggtgaacaaccctcaactcagcgatgtgcag
ttacaggtagacagtggggacgttttcttcacgcattcgtttatgctgtacacacgatgc
cccctgctggccaacatggttcacgattcaggttttggcgttcaggaggagggcatgcct
gtcgcacagagggtgttgttgggtaacgtgcttggggaggcagtactggccctcctgcag
tatctttacacagcccactgtcctctgacagacacacttctgccacatatgcaagagctt
gccgataggtttggtttgcctgagctgcagcagcagtgtgaggaatattctggaagtgtg
gaggaaaacccaagaggcatgtttccagaccctgagcctcatctcggagaccaagaagac
cagaaaatggctgaaagcaacttcttggagctcctccaatcaatgtggcagcatggggac
agcgaagaagaggatgattttaaagagactgccggagaggaacgagacatggaagaggag
caagagacaggtgatggagaggaagaggatcgggtggatgaggaagagcttgacgagatc
tatgagtttgcagcgacacaaagaaagatggagacgatgttggagactgcaaccgagacc
gaggaagaggagggagatgcaaatgcatcccttggaaatgagaagaaagataaagggaag
gagaaaaacgagtcagaatccctctcagagaaatctgccggcagttgccatagtaacaaa
caaggcgtggatgggacggaggctgccatggtaacaagtccaaaccccgatttggagact
gagagagtttgtttgattccagaattagatgaaaacacagacccggatgccagtctggat
aaaagttatgaccacttattctcccagtctgtaggggaatacatggaaccgtcacaaacg
ccagcatcctgctctcagcaacaacaaaacaagccatcgcgcacaccacagctaaacaaa
cctgccccatttcgcccgtcgtgtgtcagtgaggtgattgacctgtctataagccctcca
ccaagctcaaatgtgtcaggtgagacttccttcccaatgcctggagtgtctcctgttcct
catgagggtgaaaatagatctccactaacaaaaggcaattcaggatcccagagaattgaa
aaccccaaatccccttcagaatctcaaagcaaacaggttgagctcattgtgctctcagac
tccggtgatgaaatggaagtggacggtggccacagtgctgaacatgctttcgaatctccc
tcagaacctcctcagacgttcacaagctatgcttgcaaagtctcagagaatagtttcaaa
gaatctggatcccaaggcctggccagcaaacaggtaaatgcttctaagcaggtggagact
cgtatagaagccaagtctgaccattcagagcagcgtagccctgggattgcgaatgaaagc
gcgtttgatggctctgctgaggtttcctggctgattccagccactccggtaccgtccaca
cgctgtagctctgcccagacctgcatcagcatgcgtcgaacccaactcttccccaagtca
tcatcctcttcttcctcttcctccgtctcggacagtttgaaacctgctagctttggttct
tcaatcaaaccggtacccttgcccaaattccacaaatcagatcagagtccttctaaagaa
cttcgtagcactgatacggattgttctccaggttatcagagaccacttcaccatctaaga
ctgtctcaggttccttcaacagatgtttctcacagttcccacattgacaccgtcatgaga
cgtccaacacagggtgtccccaagccctcaagtagcactcctctccattcagactcttcc
ttacagcgtcagatcccgtttggctcccctatggttgatgactgtgaggttcggcttagg
catagtaaagataattctagatccttcggtagtcaggtgaaggttgggttaatgtctcta
caactaagttcttcatcctctagtaaaacacctgagaagatgcaaagtagctcccctccg
cagggatgctccagtccgtctacaaactctcaaagctacagttgtccagaaagatcaaga
gagagtgagaacaatgggatagagggaatggaattgggagagaatccaaatcaaagtgtt
gaagaattggtggagattggggaaaactctttttgtgacatggatgggtttggaagagga
gttggagaagagaattcaaatcaaagtgttgaagaattggtggagattgcgggaaactca
ttaaatgacatggatgagccaaagagaagagatgaaagtcctaatcaaagtgttgatgaa
aatgatgatattgcaggaaactcctgtgacatagatgggtctagaagaggagtggtagaa
gagaatccaaatcatagtgttgacgaagtggtggctgcaggaaactcatattgtgaaatg
gacgagcctcctatagcgtttgatgactcctggggtttgaatggaggggttggaagccag
aaaccccgttttagtctacgacttgacagcagtgaaggtacagtcagtccaccaggtctc
gagagtaagggaccaatgttcacatctcctcttgcatctggagcttgtaataaaactcct
gatccaagtccaggtcctttgaatcacagcctacctcatcctgacatgtgggatgattgg
gaggaggaagaggtggctccccttccactttctcagagattggcagctccctctgccaag
agagttgctgaactgaagactccagttgcttgcagaaagagggataaagcaccactggtg
cccatcactcccatgccaggcttctctgatatggacacaccagagctcaaaaacagactt
aacaggttcggcgtgcgcccgctccccaagaagcagatggttctgaagctgaaagagatc
catcactacacccaccagctgcagagctcagagtcagaggaggagacctctggaccccaa
cgccccccaaatgcctccaattcccgatctgctctgctctcctttaagcagccaacagcg
ccctctagtgtctcacctgtgaaactactaccaagtgaagaagatgagcttttatcagcc
tcacaaaactcaaacacatcctccactgcggagtctgacaggtcaaacccagagctgtgt
gtgtccgaagacgacgactcggacaacgagggcatcacggcgtctcaggctgtcgtgcgc
gagaaggacaaactcctcgcagttcgtcagttcatcctatccgatcccaaactgtacgcg
caagtgttgcagtaccagcctctttccctggcagagctgcagtccagcttgaaagcggca
ggcatcaggttaggtgctgctaaactgttagactttctggattctcagtgcattacgttt
agtacggccaaacagggccagaatgcatcttcccgcaggaaacgacgtgtgaaaacggca
accaacgcagctggtgcagccggaagagggaggaaaaaaagcagcaaacccaatggagga
attgcatga
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integrated database retrieval system
