Labeo rohita (rohu): 127153516
Help
Entry
127153516 CDS
T09007
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127153516 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127153516 (smarcd1)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127153516 (smarcd1)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127153516 (smarcd1)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127153516 (smarcd1)
PBAF complex
127153516 (smarcd1)
GBAF(ncBAF) complex
127153516 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
127153516
NCBI-ProteinID:
XP_050950560
LinkDB
All DBs
Position
22:52584743..52593118
Genome browser
AA seq
510 aa
AA seq
DB search
MAARSGFQPATPGGGGAPMGPGPPVAGAGPGMGPGTPSGRMGPGGPQNHMYRSPMPGYPR
PGMPPASRMTPQGPSMGPPGYGASPVSRPGMPVMDPSRKRPPPNQIQQVQQQNRNQHAKK
KKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIF
ISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLVIELD
KDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRLARLL
GIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRLHALL
MPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLDNKIH
ETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYYQP
WAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcgtagtggttttcagcctgcgacacccggaggcggcggagccccgatggga
cccgggccgcccgtggccggtgcagggcccggaatgggtcccggtacaccttcgggacgg
atgggacccggcgggccgcagaaccatatgtatcgatcaccgatgcccggatacccgaga
ccaggaatgcctccagccagccgtatgacccctcagggaccctccatgggacccccaggt
tacggggccagtccagtgtcccgtcccggaatgccagtcatggatccgtcccgcaagcga
ccgccgccaaatcagatccagcaggtccagcaacagaatcgcaaccaacatgccaagaag
aagaaaatggcagataaaatcctacctcaaagaatcagagagcttgttcccgagtctcag
gcatacatggacctactggcgtttgagaggaagcttgatcagaccatcatgcgcaaaaga
cttgatattcaggaagctctcaagagacccattaagcaaaaaagaaaactacggatattt
atctccaacaccttcaaccctgccaaaccggatgcagaggatggcgaaggaaccgttgcc
tcttgggagctgcgtgtggagggacgacttcttgaagacactgctgtgtccaaatatgaa
gccactaagcagaagaggaagttttcttcttttttcaagtctttagtgatcgagttggac
aaagacttgtatggtcctgacaatcatttggtggagtggcaccgaacagccacaactcag
gagacagatggatttcaggtgaagaggcctggagatgtgggtgtccgctgtactgtacta
ctcatgctggactaccagccccctcaatttaagttggaccccagacttgcccggttgctg
gggatccacactcaaacacggcctgtgatcattcaggctctgtggcagtatgtgaagacc
cacaaactccaggaccctcacgaacgagagttcatcaactgtgataaatacctccagcag
atctttgaaacccagaggatgaagttttccgagattcctcaaaggctgcatgcactactg
atgccccccgagccaatcatcatcaaccatgtcataagcgtggatcccaatgaccagaag
aagacagcttgctacgatatagacgtggaggtggacgacaccctgaagacccagatgaac
tctttcctcctgtccacggccagtcagcaagagatcgcaggcctcgacaacaagattcat
gagaccattgaaacaattaaccagctgaagactcagagagagttcatgttgagcttcgca
cgagacccgcagggcttcatcaacgactggctccagtcacagtgcagagacttaaagact
atgacagatgtggttggaaaccccgaggaggaaaggagagcggagttctactaccaaccc
tgggctcaggaggccgtgtgccgatatttctattcaaaggttcagcaaaggagacaggag
ctggaacaggctcttggcattcgaaacacataa
DBGET
integrated database retrieval system
