Labeo rohita (rohu): 127154245
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Entry
127154245 CDS
T09007
Symbol
smc3
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04110
Cell cycle
lroh04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
127154245 (smc3)
04114 Oocyte meiosis
127154245 (smc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127154245 (smc3)
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lroh00535
]
127154245 (smc3)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
127154245 (smc3)
Meiosis-specific proteins
Cohesin complex and associated proteins
127154245 (smc3)
Proteoglycans [BR:
lroh00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
127154245 (smc3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_15
AAA_21
AAA_23
OmpH
AAA_29
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
127154245
NCBI-ProteinID:
XP_050951632
LinkDB
All DBs
Position
22:21074645..21101590
Genome browser
AA seq
1216 aa
AA seq
DB search
MYIKQVIIQGFRSYRDQTVVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMK
ETEGKREKINELLKYIEERLHTLEDEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLD
ELSSKRETCGDKSRQLRDAQQDARDKVEETERVVRELKSRISAMKEEKEQLSAERQEQIK
QRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELQETEPKFNTVKEREER
GISRLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDL
EDTEANKERNLEQYNKLDQDLNEVKTRVEELDKKYYEVKNRKDELQSERNYLWREENAEQ
QALAAKREDLEKKQQLLRAATGKAILNGIDSINKVLEHFRRKGINQHVINGYHGIVMNNF
ECEPAFYTCVEVTAGTRLFYHIVETDEVSTKILMEFNKMNLPGEVTFLPLSKLDVRDTAY
PETNDAIPMISKLRYSQNFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSH
RGALTGGYYDTRKSRLELQKDMRKAEEELGELEAKLNENLRRNIERINNEIDQLMNQMQQ
IETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAE
LGTDLLSQLSLEDQRRVDDLNDEIRQLQQDNRQLLNERIKLEGIMTRVETYLNENLRKRL
DQVEQELNELRETEGGTVLTATTSELDGINKRIKDTLARSEDLDSLIDKTEVEIKDHQKS
MERWKNIEKEQNEAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTL
TLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQDELDRGYKSIMELMNV
LELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDTEGGQSQDEGEGGDSERGS
SSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYL
FDEIDQALDAQHRKAVSDMIVELAGHAQFITTTFRPELLESADKFYGVKFRNKVSHIDVI
SAEQAKDFVEDDTTHG
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgtacattaaacaggttattattcagggctttcgcagctacagagatcagactgtggtc
gatcccttcagctccaaacacaatgttatagttggaagaaatggatcaggaaagagtaac
ttcttctatgctatacagtttgtactcagtgatgagttcagtcatcttcgtccagagcag
cgtctggctctgcttcacgaaggcactggtcctcgagtcatttcagcctttgtggaaatt
atattcgacaactccgacaacaggctgccgattgataaagaggaggtgtctctccgccgt
gtcatcggagcaaagaaagaccagtacttcttggacaaaaagatggtcactaaaaacgat
gtgatgaaccttttggagagtgccggcttctcccgcagcaacccttactacatcgtcaag
cagggaaagatcaatcagatggcaacagcgcctgactctcagcgtctgaagctgctcaga
gaggtggccggcaccagagtctatgatgagcgcaaagaagagagtatctcgctcatgaaa
gagaccgagggaaagcgagagaagattaatgagctgctaaagtacatcgaggagcgtctg
cacactctggaggacgagaaagaggaactggctcagtaccagaagtgggacaaaatgaga
agagcgctggagtacaccatctacaaccaggagctcaacgagacccgggccaaactggac
gagttgtccagtaagagagagacctgtggagacaaatcgagacaattgcgagatgctcaa
caagatgctcgagacaaagtggaggagacggagcgtgtggtgagggagctgaagtctcga
atctccgccatgaaggaggagaaagaacagctgagcgccgagcgacaggagcagatcaaa
cagaggaccaaactagagctcaaagccaaagatctgcaggacgagctggcaggaaacagc
gaacagaggaaacggctgctcaaagaacggcagaagcttctggagaagattgaagagaaa
cagaaggagctgcaggaaacagaacccaaatttaacaccgtgaaagaaagagaagagcga
ggaatttcccgacttgctcaagccacacaagagcgaacagacctgtatgccaaacaaggc
agaggcagtcagttcacctctaaagaagagagggacaaatggatcaagaaagagcttaag
tctctggatcaagccatcaacgacaagaaacggcagatcgctgccatccacaaagatctg
gaggacactgaggccaataaagagagaaacctggaacagtacaataaactggaccaggac
ttgaacgaagtgaagactcgagtggaggagctggacaagaagtactacgaggtgaagaac
cgcaaggatgaacttcagagcgagagaaactacctgtggagagaggagaacgcagaacag
caggcgctggcagccaaacgagaagacctggagaagaaacaacagctactgcgagcagcc
accggaaaggctattttgaatggcatcgacagcattaataaagtattggagcatttccgc
cggaagggcatcaaccagcacgtcatcaacggttatcatggcatcgtcatgaacaacttt
gagtgcgaacctgctttctacacttgtgtggaggtgactgctggcaccaggctgttttac
cacatcgtggaaacggatgaagtgagcaccaagattctaatggagtttaataagatgaac
ctgcctggagaggtcaccttcctgcccctcagcaaactggatgtcagggacaccgcttac
cctgagacgaacgatgcaatccctatgatcagcaagctccgttacagtcaaaacttcgac
aaggccttcaagcacgtgtttgggaagacgctgatctgccgcagtatggaagtgtccact
cagctggctcgagcttttactatggactgcatcactctggagggtgatcaggtgagtcat
cgtggcgctctgaccggtggttactacgacacgcgtaagtctcgtctggagctgcagaag
gacatgaggaaggccgaggaggagctcggagaactggaggccaaactcaacgagaacctg
cgtagaaacattgaacgtatcaataatgaaattgaccagctgatgaatcagatgcagcaa
atcgagactcagcagaggaagttcaaggcatccagagacagtatcctgtctgagatgaag
atgctaaaggagaagagacagcagtctgagaaaacatttatgcccaagcaacgtagtctt
cagagtctggaggccagtctgcacgccatggagagcacgcgggagtctctaaaagcagag
ctgggtacggacctgctctctcagctcagtttagaagaccagcgcagagtggacgacctc
aacgacgagatcagacagctgcaacaggacaacagacagctgctgaatgagagaattaag
ctggagggaatcatgaccagggtggagacgtacctcaacgagaacctgcgcaaacgtctc
gaccaagtcgagcaggaattgaatgagctaagagaaaccgaaggaggaaccgtcctcacg
gcgacaacgtcagaattggatggcattaataaacgcataaaagacactttggctcgatct
gaggatttggactccctcatcgataagacggaggtggaaataaaggaccaccagaagagt
atggagcgctggaagaacatcgaaaaggagcagaacgaagccatcaaccatgacacgaag
gagctggagaagatgaccaacagacagggcatgttactgaagaagaaagaggagtgcatg
aagaagatccgcgagttgggttcgctgcctcaggaggccttcgaaaagtaccagacgctc
acactcaaacagttgttcaggaagctggagcagtgtaacacagagctgaagaagtacagc
catgtgaacaaaaaagccctggaccagtttgtcaatttctcagagcagaaagagaagttg
attaagaggcaggacgagctggacagaggctacaaatccatcatggagctcatgaacgtc
ctggagctacgcaaatacgaggccatccagctcacttttaaacaggtgtctaagaatttc
agtgaggtatttcagaagctggtgcctggcggtaaagccactctggtgatgaagaagggt
gacactgaaggtggacagtctcaggacgagggcgagggaggagacagtgagaggggatct
tcctcccagagcagcgtgcccagtgtagaccagttcactggagtgggcatcagggtgtcg
ttcacaggtaaacagggagagatgagagagatgcagcagctttctggaggtcagaagtct
ttggtagctctggctctcatctttgccatccagaaatgcgaccctgctcctttctacctg
tttgatgaaatcgaccaggctctggacgcccagcacagaaaagcagtgtcagacatgatc
gtggagctggctggacatgcccagttcatcaccacgaccttcagaccggagctgctggag
tcagccgacaagttctacggcgtcaaattcagaaacaaggtgagtcacatcgacgtgatc
tcagcagagcaggcgaaggactttgtggaggacgacaccactcacggctaa
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