Labeo rohita (rohu): 127154617
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Entry
127154617 CDS
T09007
Symbol
tnn
Name
(RefSeq) tenascin-N isoform X1
KO
K06252
tenascin
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127154617 (tnn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127154617 (tnn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127154617 (tnn)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127154617 (tnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_2
Interfer-bind
EGF_Tenascin
Pur_ac_phosph_N
SdrD_B
NDNF
hEGF
EGF
Motif
Other DBs
NCBI-GeneID:
127154617
NCBI-ProteinID:
XP_050952222
LinkDB
All DBs
Position
2:complement(24112890..24151622)
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AA seq
1020 aa
AA seq
DB search
MIVRFNRLKRGLFLLGTLFAVSRLVLSEEVGNAEKEVTFSHVYRIDSGCKQGSQVAQLSQ
DQASEGQLVTVDGENDIVFKHNIRLQSAGCGCADSEDFKSLLYRINGLEEEVTYLKSQCA
QGCCKGGSGVDISCSGHGTYQHDSCSCKCNPGWEGPDCSISSCPDECNDNGRCVDGRCVC
YEGYTGHDCSQLTCPNDCKDKGHCVDGKCVCFSGFSGEDCSNATCPNDCIGNGRCVDGQC
ICDEGFFGIDCSMVLGPKGLRLIKVTDVSLLVEWESVKGAEYYILSYYPKGDEGAIKEVQ
VENTKNSYLITGLKPGVTYIVQVYAVIRGINSESDEIVATTDVSGIEGIKVVGQTEDSIQ
VDWKNPAIAVDYFKLTHASPDGQEGQENVAMSQEARTKHTIVGLSPGTEYQIGVQAIKGE
MEGKPSYATGVTDIDAPTNLATRKVTENSATVTWDGVRAEIDGYMLTYSSSGGASREIKV
GADATSYQLTSLKPGVLYTVFLWAYKGSRSSRKSMTEPETDIDAPTNLMTREVTEDSAMV
TWDKVQADIDGYMLSYSSIDGSGQEVRVGADSTSYKFNGLKPGVLYTVYVWAIKGPRSSK
KSSTEAETDIDAPTNLLTREVTEDSAMVTWDKVQADVDGYMLSYSSIDGTSQEVRVGADS
TSYSFTGLKPGVLYTVYVWAVKGSRSSRKASTEAETEIDAPKNLKAIDVQTETSTVTWKA
PRANIDGYILTYRAEDGSIQTVEKTLTAQENRFALSNLAMGKKYIVTLIAYRGTKRSKIV
ETSFSTVGMAYPFPMDCTQIMRNGNMESGIYTIYVNNNRSKTMQVYCDMTTDGGGWIVFQ
RRNTGKLDFMRRWREYMKGFGELADEFWLGLEKIHELTNTPTQYEVRFDLGFGSERKYAV
YDNFKVAPSKQKFKLTIGNYKGDAGDAMTYHQGGSFSTVDSDNDIALGNCALIHQGAWWY
KNCHLANLNGRFGDNRHSMGVNWEPWKGHLQSLDFAEIKIRPVGAAGRKKRSLKRRVAVY
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgattgtaagatttaaccggctgaagagaggcctgttccttctagggacgctctttgcg
gtgtcccgtcttgtgctgtctgaggaggtgggtaatgcagagaaagaagtcacgttcagc
catgtctacaggattgactctggttgtaagcagggttctcaagtggctcagctttcccaa
gaccaggcctcagaaggacagttagtcacagtggatggagagaatgacattgtcttcaag
cacaacatacgcttacagtcggctggttgtggatgtgcagattctgaggacttcaagtcc
ctgctgtaccgtataaatggcctggaggaggaagtcacctatctaaagagccaatgtgct
cagggctgctgcaaaggaggttcaggtgtggacattagctgtagtgggcatggcacgtac
cagcatgactcttgcagttgtaaatgtaacccaggctgggagggtccagactgttctatc
tcatcctgccctgacgaatgcaacgataatggccgctgtgttgacggacgctgcgtctgc
tatgaaggctacaccggccatgactgcagccagctcacgtgccccaacgactgcaaagac
aaaggccactgtgtggatggcaaatgtgtgtgcttcagtggattctcaggagaagactgc
agtaacgccacctgtccgaatgactgcataggtaacggacgctgcgtggatggacagtgc
atctgcgatgagggattctttggaatcgactgctccatggttctaggaccaaaaggcctc
cgtctgatcaaagtcacagatgtgtctctgctggtggagtgggagtctgtgaaaggagcc
gagtactacatcctgtcctactatccaaagggagacgagggagccattaaagaggtccag
gtggaaaacacgaaaaactcctatctgatcacaggcctcaaacccggagtcacgtacata
gtgcaggtgtacgctgtcatcaggggcattaacagtgaatccgatgaaatagtggctacg
actgacgtctctggtattgagggaatcaaggtggtgggccagacagaggactctatccag
gtggactggaagaaccctgcgattgccgtggactacttcaaattgacccatgccagcccc
gatggtcaggaaggacaggagaacgtggcaatgagccaagaagccagaaccaagcacacc
attgtaggcctcagcccgggaacagaatatcagataggcgtgcaagcgatcaaaggtgaa
atggaaggcaagccgtcgtacgccacaggggtcacagacattgatgccccaaccaatctg
gcaaccaggaaggtgacggagaactccgcgaccgtgacgtgggatggcgttcgtgctgag
atcgacggctatatgctgacttacagctcttcagggggcgccagccgagaaattaaagtg
ggcgcagacgctacgtcttaccagctgacctctctaaaaccgggagtcctgtacacagtt
ttcctctgggcttataagggctctcgttccagtaggaagagcatgaccgagcccgaaacg
gatatagatgctcctactaacctcatgaccagggaggtgacagaggactctgcgatggtg
acgtgggacaaggtgcaggctgacattgatggctacatgctgagctacagctctatagat
ggctccggtcaggaggttcgagtaggagctgacagcacctcctacaagttcaatggtctg
aagcctggagttctctacacagtctatgtgtgggccatcaagggcccccgctctagcaaa
aagagctcgacggaagcagaaacagatatagatgctcctactaacctcttaacccgagag
gtgacagaggactcggcgatggtgacgtgggacaaggtgcaggctgacgttgatggctat
atgctgagctacagctctatagatggcaccagtcaggaggttcgagtaggagctgacagc
acctcctacagtttcactggtctgaagcctggagttctctacacagtctacgtctgggct
gtgaaaggctctcgttcaagcagaaaagcctcaactgaggctgaaacagagattgatgcg
ccaaagaatctcaaagccattgatgttcagactgaaacatccactgtaacatggaaagct
cctcgggctaatattgatggctacatcctgacctacagggctgaggatggcagcatacag
actgtggaaaaaacgttgactgcgcaggagaatagatttgctctctctaatcttgcaatg
gggaaaaagtacattgtcacccttattgcctatagaggcacgaagaggagtaaaatagtg
gagacaagctttagcacagtgggaatggcctatccgttcccaatggactgcactcagatt
atgaggaatggaaacatggagagtggcatctacaccatttacgtcaacaacaaccgtagc
aaaaccatgcaggtgtactgtgacatgacaactgatggcggcggctggattgtgttccag
agacgaaacactggcaaattagatttcatgaggcgctggagagagtatatgaaaggcttt
ggagaactggcagatgaattttggctcggcttggagaagatccatgaactgactaatact
cctacacaatatgaagtgcgtttcgatctgggcttcggatctgagcggaaatatgctgtc
tacgataacttcaaagtagcaccatccaaacagaagtttaaacttaccattggcaactac
aaaggagatgctggtgatgccatgacctaccaccagggagggtctttctccacggtggat
tcagacaatgacattgcacttggtaactgtgctctgattcaccaaggtgcatggtggtac
aagaactgccacctggccaatctgaatggcaggtttggggacaacagacacagtatggga
gtaaactgggagccatggaaggggcacctccagtctctcgactttgcagaaattaagata
cggccagtgggagcagcgggcagaaagaagaggtcattgaagaggagagtagctgtgtat
taa
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