Labeo rohita (rohu): 127155041
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Entry
127155041 CDS
T09007
Symbol
nfatc2a
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear factor of activated T-cells, cytoplasmic 2
KO
K17332
nuclear factor of activated T-cells, cytoplasmic 2
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04020
Calcium signaling pathway
lroh04148
Efferocytosis
lroh04218
Cellular senescence
lroh04310
Wnt signaling pathway
lroh04370
VEGF signaling pathway
lroh04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
127155041 (nfatc2a)
04370 VEGF signaling pathway
127155041 (nfatc2a)
04020 Calcium signaling pathway
127155041 (nfatc2a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
127155041 (nfatc2a)
09143 Cell growth and death
04218 Cellular senescence
127155041 (nfatc2a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
127155041 (nfatc2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127155041 (nfatc2a)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) NF-AT
127155041 (nfatc2a)
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Gene cluster
GFIT
Motif
Pfam:
RHD_dimer
RHD_DNA_bind
Motif
Other DBs
NCBI-GeneID:
127155041
NCBI-ProteinID:
XP_050952950
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Position
23:5178055..5215918
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AA seq
901 aa
AA seq
DB search
MSSFYGDKTALGLAEELSQVHCQDELEFEYLFEYGSTAALQDDQSISSHKDLISSPGLSY
PVEEAQPYGIKPCAASFTELSAEGLSGYEQLEPKGFLENIRPNSQALSPRIEITPSREHY
SHGRDSLQNHLINTSPSPGLTVPGHDPLAYREPQCLSPASSNSSTSWHSENLSPWASPCV
SPSNSQAAGELCPRLQGVHTGSPRTSPGTSPRTSLAEDGCVGPRSPSPRPGSRSTSPLCK
RTYDMYRNLVPVARSRSPSPHGGHEEHHAHHYGSNNISGVMNGFGAAQASSIPTKIVKTN
QQAYSVYPDNHTESYLVSCDQDVKTKPGPEPFFVIPQIWPKQLVPGICSIPVASLPPLEW
PLPSRTDQYELHIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLRGYRGKEPLGLQIF
IGTADERILKPHAFYQVHRITGKTVTTTSYEKIINSTKVLEIPLEPKNNMKAIIDCAGIL
KLRNADIELRKGETDIGRKNTRVRLVFRVHIPQQGGQHVSLQAASHPIECSQRSAHELPM
VEKQDMDACSVLGGQQMILTGQNFSADSKVIFMEKTHEGQQMWELEATVDKDKSQASMLF
IEVPPYRDPSICHPAKVNFYVINGKRKRSQPQHFTYTPLPVPSIKTEPVDEYEPGRMGYS
MSQMLGVSPQQYYNPRGVITPDSGLVPGLVPCQQTRLGVSPPDHRFQQQSPAIMYSRPGK
SLSSSPIYSQTGPAMIPDSHRSVLVHTGSPAQSSHLAGQHPSNQHSSIIQFSPTNHHMLR
GGDPPAPPPPEHQHIIYCEGYDQHGPQATGANRSPAPAQAPQHPQNYPTVIQQQPFLQRV
AKDRSPPVQVEPQRCSSAEEQRTSAPGRVTVKQENLDQAYLDDVNEIIRKDLTGVPGRSQ
T
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgagctctttttacggcgataagactgcgttaggactggctgaggagctcagtcaggtg
cactgtcaggatgaactggagtttgagtatctctttgagtatggatccacagcggcactt
caagatgatcaaagcatctcctcgcacaaagacctcatctcttctcccggcctttcctat
cctgtggaggaagctcagccgtacggtattaaaccgtgtgcggcttccttcaccgagctc
agcgccgaaggtctctcaggctacgagcagctggagccgaagggcttcctggagaacatc
cgacccaacagccaggccttgagcccccgaatcgagatcacaccctcccgcgagcactat
agccatggtcgagactcgctccagaaccatctcataaacaccagccccagtcccggtctc
accgtgccaggtcacgaccctttggcctaccgggagccgcagtgcctgagtcccgccagc
agcaactcatccacctcctggcactcggagaacctctcgccctgggcttccccttgcgtt
tcgcccagcaacagccaagcggctggagaactttgcccacgcctccagggcgtccacacg
ggttcccctcgaaccagtccgggcacttctccgcgaaccagcctggccgaggacggctgc
gtggggccgcgctctccttcgccccggcccggctcgcgttccacctcccctctatgcaaa
cgcacctacgacatgtacagaaacctggtgccggtggcccgttcgcgcagcccgtcgccc
cacggaggtcacgaagagcatcacgcccaccattatggctccaataacatctcaggggtc
atgaatggctttggcgctgcccaagctagttccattcctaccaaaatcgtgaagaccaac
cagcaggcctactcggtttaccctgacaaccacactgagagctacctggtgtcgtgtgac
caggatgtgaagaccaaacctggccctgaaccgttcttcgtaatccctcaaatttggccc
aaacagctggtgcctggaatatgcagcatccccgtggcctccctgccccctctggagtgg
cctctgcccagccgcaccgatcagtatgagctgcacatcgaggtgcagcccaaaccgcac
cacagggctcactacgagaccgagggcagccgcggggcggtcaaggcccctaccggagga
cacccggtggtccagttacgtggatacagaggcaaggagccactgggattgcagatcttc
attggcacggcagacgagcgaatcctcaagccgcacgctttctaccaagttcatcgcatt
accggcaaaaccgtcaccaccaccagctacgagaagatcatcaacagcaccaaagtcctg
gagattcctcttgagccaaagaataatatgaaagcaataattgattgcgccgggattctc
aagcttcgcaatgccgacatcgagctgcggaaaggagagacggacatcgggcgaaaaaac
acacgtgttcgactggttttccgtgttcatattccccagcaaggaggccaacatgtgtct
ttgcaagctgcttcgcatcccatcgaatgctcccagaggtctgcccacgagctgcccatg
gtagaaaagcaggacatggacgcctgttcagttcttggaggccagcagatgattctcacc
ggccagaacttcagcgcagattcaaaagtgatcttcatggagaaaactcacgaaggacag
caaatgtgggaattggaagccacagttgacaaagacaaaagtcaggcgagcatgctgttt
attgaagtgcctccatatagagacccatccatttgccatcccgccaaagtcaacttctat
gtaataaatgggaaacggaagcgcagtcaaccgcagcatttcacctacacgcctctacca
gttccctctattaagacggagccagtggatgaatatgaacctggtcggatgggttattcc
atgtcgcagatgctcggggtgtctccccagcagtactataaccctcgtggggtcatcacc
ccagacagtggcctagtgcctggtctcgtcccgtgtcagcagacccgcctgggcgtctcc
cctccagaccaccgatttcagcagcagagcccagccattatgtattcccgtcctggaaag
agtttgtcaagcagtcctatctactctcagacagggcctgctatgatcccagactcccat
agatcggttctggtccacacgggttccccagcccagtcctctcacctggctggccaacat
ccttccaaccagcattcctcaatcatccagttctctcccaccaaccaccacatgctcaga
ggaggagatcctcccgcaccaccaccgccagaacatcaacacatcatttattgtgagggc
tacgatcagcacggtcctcaagccacaggggcaaaccgttcgccggcaccagcccaggca
cctcaacaccctcagaattaccccacagtcatccaacaacagcccttccttcagagagtg
gccaaagacaggtcacctcctgtccaagtagagccccagagatgttcctcagcggaagag
cagagaaccagcgctcctggacgagtcacagtcaagcaggagaacttggaccaggcctac
cttgatgatgtgaatgagatcatacggaaggatctgacaggagtgcctggcaggagtcag
acatag
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