Labeo rohita (rohu): 127155233
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Entry
127155233 CDS
T09007
Symbol
exosc10
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127155233 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127155233 (exosc10)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
127155233 (exosc10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
127155233
NCBI-ProteinID:
XP_050953284
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All DBs
Position
23:complement(24481461..24496486)
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AA seq
904 aa
AA seq
DB search
MAASSSSAATAKQSDHSSPAEETEEETEFCPGFKDVDAFVKHGLGAVVAATKASAALPAT
GDEFDLYRSFPAFQQFCASQGDRLLHCMSQIMQHHGCRSHMRDRNKLTGLEDRFDLVVDS
NDAILEKVGILLDEASGVSRTQQPVMPAGYQPPKIVVSSWNRKGGNRKEETFHLLHAKNI
QRPQLKFREKVDNSNTPFVSRIFIKPNAVKPLPSYFADKHIRKERPEDLDVPAALADFIH
QQRTKEHVDDMFSHPYQYELDHLVMPESLKCKPEVQMYKPLAECTCQFINTLDDLVALNE
KLARMSEFAVDLEHHSYRSFLGITCLMQISTREEDFIIDTLELRSEMYILNETFTDPAIV
KVFHGADSDIEWLQKDFGLYVVNMFDTHHAARCLNLGRNSLDHLLKVYCNVNSDKRYQLA
DWRIRPLPDEMLKYAQADTHYLLYVYDRVRADLYDTGNGQPTLIQQVWDKSRDLSLKKYV
KPIFTEDSYMELYRKQKKSFNTQQLAAFRLMYAWRDKLAREEDESTGYVLPNHMMMKIAE
ELPKEPQGIIACCNPTPPLVRQQINELHQLIKQARETPLLKAEVLAEKRKSMTPQRKPQS
ILFGPHDTSRSSESDFLDHSSFETPTKPGVLFSEEEDESVNQVKKSLHGLTAPAKISLFA
GEEEEAAAAPAHLTVAQQKAHSIMESFENPFRMYLPSKDIHISTNAKYDPSSKIYEIRNR
WKLQSIEQQQKEAQEKRLAKEQAKKAQEERKKAKLSYQESLQNVHTVRQQVAKAKQTGQK
RERAASDAGEESLKPNTKVSKTESETSVAGQSTKPAQNKKKQKKDEEPEVPEQNFTPFDY
NQSNFKIFDGKSKESSHFDPNRQAHGPKHKKNQKGQKKNNVGGRSMSYLPTKSDRGFRHN
WPKR
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcctcgagtagtgctgccactgctaaacagagtgatcattcttcacctgct
gaagaaacagaggaggaaacagagttttgtcctggttttaaagatgtcgatgcatttgtc
aagcatggtctgggagcggtggtcgcggccacgaaagcgtctgcggctcttccagcaacc
ggagatgagtttgatctgtaccgcagcttccctgccttccagcagttctgcgcttcacag
ggagatcgactcttacactgtatgagccagataatgcagcatcatggctgtagatctcac
atgagagacaggaacaaactgactggactggaggaccggtttgacctggtggtggactca
aacgatgccatccttgagaaagtgggcattctcctggacgaggcctctggtgtgagtcgc
acccagcagcctgtgatgcctgcaggatatcagccgccaaagatcgtcgtgtcaagctgg
aatcgcaaaggaggcaaccgcaaggaggagacctttcatcttctacatgctaaaaacatt
cagcggccacagctcaagttcagggagaaagtggataacagcaacactccgttcgtctcc
agaattttcatcaaacccaatgctgttaaacctctgccatcatattttgccgacaaacac
attcgtaaggagagacctgaggatttggatgttcccgctgcattggcagattttatccat
cagcaaagaacaaaagagcatgtggacgacatgttttctcacccctatcagtatgaattg
gatcatctggtcatgccggagagtctgaagtgtaaacctgaagtccagatgtataaacct
cttgctgagtgcacttgtcagttcatcaatactttagatgacctcgttgctttgaatgag
aagttggccaggatgtcagagtttgctgtggacctggagcatcattcctacagaagcttt
ctgggaatcacgtgtctgatgcagatatcaacacgggaggaggatttcatcatagacacg
ctggaactgcgtagcgaaatgtacatcttaaatgagactttcacagacccagccatcgtg
aaggtgtttcacggtgcagactctgacatcgagtggctacagaaggactttggtctttat
gtggtcaacatgtttgacacccatcatgctgcacgttgcctaaacctcggccgaaactcc
cttgaccatctcctgaaagtctactgcaacgtgaactctgataaacgctaccagctggca
gactggaggatacgaccgttgccagatgagatgttgaagtacgcccaggctgacacccac
tacctattgtacgtgtacgatcgagtccgagctgacctgtatgatacgggcaatggccaa
cccaccctcattcagcaggtctgggataaaagcagagatctctcactcaagaaatatgtg
aagcctatttttacggaggactcgtacatggagctgtatcgcaagcagaagaagagcttc
aacacacagcagctggcggcattcagactgatgtacgcctggagagataaactggcacga
gaggaagatgagagcaccggatatgtcttgccaaaccacatgatgatgaagatcgcagag
gagcttccaaaggagcctcagggcatcatcgcgtgctgtaaccccactccaccactagtg
cggcagcagatcaatgagcttcatcagctgatcaaacaggctcgagagactcctttactc
aaggcagaggtacttgctgaaaaaaggaaatcaatgacccctcaaagaaagccacagtcg
attttattcggaccgcatgacacctcccgctcatctgaaagtgatttcttggaccactca
tcttttgaaactccaaccaaaccaggagttttgttttcagaggaggaggatgaaagtgtg
aaccaagtgaaaaagtctttgcacggcctgacagctccagctaaaatcagcctttttgcg
ggggaggaggaggaggcagcagcagctcctgctcatctcacagtggcccaacaaaaagct
cacagcatcatggagtcattcgagaaccccttcagaatgtatttaccatcaaaggatatc
cacatatccacgaatgccaaatatgacccctcgtcaaagatttatgagattcgtaatcgg
tggaagctacagagtattgagcagcagcagaaggaggcgcaggagaaacggctagctaaa
gaacaggccaagaaagctcaagaggaacgaaagaaagctaaactgagctaccaggagtca
ctgcaaaacgttcacactgtccggcagcaagtagcgaaagcaaagcagactggacagaaa
agagagcgagctgccagtgatgcaggagaagagagtcttaaaccaaacacgaaagtctca
aagactgaaagcgaaacatcggttgctggtcagtcgacaaaacctgctcagaacaaaaag
aaacagaaaaaagatgaagagcctgaagttcccgaacaaaactttacaccttttgactac
aaccagtcaaattttaaaatattcgatggtaaatcaaaagagagttcacattttgatcca
aacagacaagcacatggacccaagcataagaaaaaccaaaaaggacagaagaaaaacaat
gtgggcggcaggagcatgtcttatttacccaccaaatctgacagaggatttcgccacaac
tggcccaagagatag
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