Labeo rohita (rohu): 127155261
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Entry
127155261 CDS
T09007
Symbol
scn8aa
Name
(RefSeq) sodium channel, voltage gated, type VIII, alpha subunit a isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
127155261 (scn8aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127155261 (scn8aa)
Ion channels [BR:
lroh04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
127155261 (scn8aa)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
FraC
ATP-synt_B
GPHH
Neur_chan_memb
HB_ELP1
Lustrin_cystein
HpsJ
IQ
Motif
Other DBs
NCBI-GeneID:
127155261
NCBI-ProteinID:
XP_050953334
LinkDB
All DBs
Position
23:13682413..13758965
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AA seq
1958 aa
AA seq
DB search
MAAPLLAPPGPDSFKYFTRESLCEIEKRIAEEKAKPPPKPDSSYRDDDDENKPKPNSDLE
AGKSLPYIYGDIPPGMVATPLEDIDPFYVNKKTFIVLNKGKTIFRFSATPSLYMISPFNL
ARRIAIKILIHSVFSMFIMCTILTNCVFMTFSNPPEWSKQVEYTFTGIYTFESAVKIIAR
GFCIDDFTFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCVIWPINITEQYQANGSHAF
NWDDYIMNETNFYFLPDQSDGLLCGNSSDSGRCPEGYTCMKAGRNPNYGYTSFDSFGWAF
LALFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TMEEAEQKEAEFKAMLEQLKKQQEEAQANAMATSAGTVSEDVVEDDGDGGGNLSCSSSEM
SKLSSKSAKERRNRKKKWRQKEQDKEKGDSEKFVKSESDDGSRRSRFRFPDNRLGRRSSI
MNQSLLSIPGSPFPSRRNSKSSIFSRCKDGGSENEFADDEHSTVEEYDERRDSFLSPQRR
SSYTGYYGKRNSTVDCNGVVSLIGPGPGGRLLPEVIIDKAATDDSPTTDLEIKKKLSGSL
MVSVEQLNTSFGRKERANSVMSALTNTLVEELEESQRKCPPCWYKFANTFLIWECGPVWM
RVKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTKHFEHVLTVGNLVFTGIFTAEM
FAKLVAMDPYYYFQEGWNIFDGFIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPT
LNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYKDCVCKIDKDCELPRWHMN
DFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMVIGNLVVLNLFLALLLSSF
SADNLAAPDDDGEMNNLQIAVIRIKKGIAWVKARVRELVNIILRRKVTDEAKPLDDMYDR
KLNCIANHTGVDISRDLDYQKNGNGTTSGIGSSVGKYMIDDDHMSFIHNPNLTVCVPIAV
GESDFENLNTEDFSSESEAEGSKELDEISSSEGSTIDIKPEVEEAVVVEAVEEYLDPEPC
WTEACIARYKCCDVPITEGWGKSWWFLRKTCYLIVEHNWFETLIIFMILLSSGALAFEDV
YIEQRKTIRIILEYADKVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFFIVDVSIVSLI
ANALGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLI
FSIMGVNMFAGKYYYCYNATAKAMFEIEVVNNRSECQALIDQNNSEVRWRNVKINFDNVG
AGYLALLQVATFKGWMDIMYAAVDSRKVGDQPKYEDNIYMYIYFVIFIIFGSFFTLNLFI
GVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNKLQGMVFDFVT
QQVFDISIMILICLNMVTMMVETDDQSQETENILYWVNFIFIVAFTSEFVLKLFALRHYY
FTNGWNIFDCVVVILSIVGMFLADLIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTL
LFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKRESGIDDMYNFETFGNSMICLFM
ITTSAGWDGLLAPILNYPPDCDPDKENPGTSVKGDCGNPSVGIFFFVMYIIVSFLIVVNM
YIAIILENFSVATEESADPLCEDDFESFYEIWEKFDPTASQFITFAKLGDFADTLEHPLR
VPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGDLDMMRQQMEERFIAANPSK
VSFEPITTTLRRKQEHVSAGVIQRAYRAHLIRRGFICKRLLSSTRLENGGTNQDKKEGTP
STASLPSYDSVTKPEKEKLEESEGKEGKNQKDVKESKC
NT seq
5877 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaccccttcttgcaccgccaggacctgacagcttcaaatactttaccagggaa
tctctgtgtgaaatcgagaagcgcattgctgaggagaaagccaagccgccacctaaacca
gacagcagctaccgcgacgatgatgacgagaacaagcccaagcctaacagtgacctggag
gcgggcaaaagtctgccctacatctacggggacatccctcctggaatggtggcaacacca
ttggaggatatcgatcccttctacgtgaataagaaaacgtttatagtcctaaataaaggg
aaaacaatcttccgctttagtgccacaccttccttgtacatgataagcccttttaatctc
gctagacgaatagcgattaaaattttgatacattcagtattcagcatgttcattatgtgt
acgattttgaccaactgtgtgttcatgacttttagtaatcctcctgagtggtccaaacaa
gtagagtataccttcactggaatttatacgtttgaatcagctgtaaaaatcattgcccgt
ggattctgtatagatgacttcacattccttagagatccatggaactggctggatttcatg
gtcatctcgatggcatatgtaacagagtttgtggacctggggaatgtatctgcgctgaga
acattcagagttctccgagcattgaaaactatctctgtcattccaggtctgaagaccatt
gttggcgctttgatccagtcggtgaagaagctgtcagatgtgatgatcctcaccgttttc
tgcctcagtgtctttgccctcattggtctgcagctcttcatgggaaatctgcggcacaag
tgtgtcatctggcccatcaacatcacagaacaataccaggccaatggcagccatgcattc
aactgggatgattacatcatgaatgagactaatttctacttcctgccagaccagtcggat
ggtcttctgtgtggaaacagttctgattcaggtcgctgtcctgaaggctacacatgcatg
aaggctggtcgcaatccaaactatgggtacaccagctttgacagttttggctgggctttc
ctggctctgttccgccttatgacgcaggactattgggagaacttgtaccagctgaccctg
agagcagcagggaagacctacatgattttctttgtgctggtgatctttgttggttcattc
taccttgtgaatttgatcctggctgtggtggccatggcatatgaggagcagaaccaggcc
actatggaagaggcggagcaaaaggaggcagagtttaaagccatgttagaacagctgaag
aaacagcaggaggaggcgcaggctaatgccatggcgacatcggcggggacggtgtctgag
gacgtggtggaggatgatggtgatggaggtgggaacttgtcatgcagctcatctgagatg
tctaaactgagctccaagagtgccaaagagcgacgcaaccgcaagaagaagtggcggcag
aaagagcaggacaaggagaaaggggacagtgagaagtttgtcaaatctgaatcggatgat
ggaagcaggaggagcagattccgttttcctgacaaccgtttaggacgtagaagttctata
atgaaccagtctctgctcagcatcccaggctcaccattcccttcaagacgcaacagcaag
agcagcatcttcagccgctgtaaggacggaggctccgagaacgagtttgcagatgatgaa
cacagcacggtcgaggagtacgacgagcggcgcgattctttcttaagcccgcaacgtcgc
agcagctacacgggttactacggcaagcgcaacagcacagtggattgcaatggagtggtc
tctctcatcgggccggggcctggcggacgcctactgcctgaggtgataatagataaggca
gccactgacgacagcccaaccactgatctcgaaatcaagaagaagctctcaggctctcta
atggtttccgtagagcagcttaacacatcatttgggcgcaaggagcgagctaacagtgtc
atgagtgcgttaaccaacacattggttgaggaattggaagagtctcagaggaagtgtcca
ccatgctggtacaaatttgccaacacgtttctaatctgggagtgcggccctgtttggatg
agggttaaggagattgtgaacctgattgtgatggaccctttcgtagacttggctatcacc
atttgtattgtgctgaatactctcttcatggccatggagcattaccctatgacgaagcat
tttgagcatgtgctgactgtcggaaacctggtgtttactggaatcttcactgccgaaatg
tttgccaaactggttgcaatggacccatactactatttccaggaaggttggaatattttt
gacggctttattgtgagcttgagtttaatggagttgggcttggctaacgtggaaggtctt
tctgtgttgagatcattccgattgctgagagtttttaaactggctaagtcatggcccacc
ctcaacatgctgataaagatcatcggtaactcagtgggagctttgggaaatctgaccctg
gtgttggccatcatcgtcttcatctttgctgtggtgggcatgcagttgtttgggaagaac
tacaaggactgcgtgtgtaagatcgataaggattgtgagctgccccgctggcacatgaat
gacttcttccactcattcctaatcgtgttccgggtgttatgtggagagtggatcgagacc
atgtgggactgtatggaagtggctggacaggcaatgtgtctcatcgtcttcatgatggtc
atggtcatagggaacttggtggtcttgaatctgttccttgccttgctgctgagctcattc
agcgcagacaacttggcagctcctgatgatgacggtgagatgaacaacctgcagatcgca
gttattcgcatcaagaagggaatcgcttgggtgaaggccagagttcgagaactggtcaac
atcatcctcaggaggaaggtcaccgacgaggccaagccgctagacgacatgtacgaccgg
aagctgaactgcatcgccaatcacacaggcgttgacattagccgtgacctggactatcag
aaaaatggcaacggaaccaccagtggtatcggcagtagcgtgggcaagtacatgattgat
gacgaccacatgtccttcatccacaaccccaacctgactgtatgcgtgcctatcgctgtg
ggcgagtcggactttgagaatctcaacacagaagatttcagcagcgaatctgaagcagag
ggcagcaaagaattggatgagatcagctcttcagagggcagcaccatagatattaaacca
gaggtggaggaagcggtggtggtggaggcagtagaggaatatcttgacccagaaccttgt
tggactgaagcttgcattgcccgctacaagtgttgtgatgtgcccatcacggagggctgg
ggtaagagttggtggttcctccggaagacctgctatctcattgtggaacacaactggttt
gagaccctcatcatctttatgatcctcctcagtagtggagcattggcttttgaggatgtg
tatattgaacagaggaagacaatccgtatcattctggagtatgctgataaagtctttacc
tacatcttcatattggagatgttgttaaagtgggtggcctacggttttgtcaagtacttc
accaacgcctggtgctggctggatttcttcattgttgacgtgtctatagtcagccttata
gctaatgcgctgggctactccgaactagggcccattaaatcactcaggacactaagggcc
ctgagacccctcagagcattgtcacgttttgaagggatgagggtggtagtcaacgccttg
gtgggtgccatcccttccattatgaatgtgttgctggtttgcctcatcttttggctgatt
ttcagtatcatgggtgtcaacatgtttgcggggaagtactactactgctacaatgcgact
gcaaaggcaatgttcgaaattgaagtagtcaacaacagatcagagtgccaagcgttgata
gatcagaacaactctgaggtgcgctggagaaacgtcaaaatcaactttgacaatgtgggt
gctggttacttggctctactgcaagtggcaacctttaaaggatggatggacatcatgtat
gcagcagttgattcacgaaaggtgggagaccagccaaagtatgaggataacatctacatg
tacatctactttgttatcttcattatatttggctccttcttcacactcaacctcttcatt
ggtgtcatcattgataacttcaaccagcagaagaaaaagtttggagggcaggatatcttc
atgacagaggaacaaaagaagtactacaatgcaatgaagaagcttggctctaagaaacct
cagaaacccatacccagaccccagaacaagctccagggaatggtgtttgactttgtgaca
cagcaagtctttgatatttccatcatgatcctcatctgtttgaacatggtcaccatgatg
gtcgagacggacgatcagtcacaagagaccgaaaacattctgtactgggttaacttcatc
ttcatcgtggccttcacctctgagtttgtcttgaagctctttgcactgcgtcattattac
tttaccaacggctggaacatctttgattgtgttgtggtcattctctctattgtgggtatg
ttcctggctgacctgatcgagaagtactttgtgtcaccaacgttgttcagggtaatccgt
cttgctcgaatcggacgtatcttgcgtctgatcaaaggagcaaagggcattcggacttta
ctgtttgccctgatgatgtcactgccggccctgtttaatatcggcctccttttgttcttg
gtcatgtttatcttttctatctttggcatgtcaaactttgcctacgtcaagcgggagtct
ggcatagacgacatgtacaatttcgaaacatttgggaatagcatgatctgcctgttcatg
ataaccacctcggcggggtgggatggccttctcgctcccattctcaactacccaccggac
tgtgacccggataaggagaatccaggtacctcggtgaaaggagactgcggaaacccttcg
gtgggcatcttcttcttcgtcatgtacatcatcgtctcgttcctcatcgtggtgaacatg
tacatcgccatcatcctggagaacttcagcgtcgccacggaagagagcgccgatccactt
tgcgaggacgactttgagtccttctacgaaatctgggaaaagtttgaccccactgcctcc
cagtttatcaccttcgccaagctgggtgacttcgccgacacactggagcacccgctccgc
gttcccaagcccaacactatagagctgatcgcaatggacctgcccatggtgagcggcgac
cgtattcactgcctagacatcctgtttgccttcaccaaacgcgtgttgggtgacagcggc
gacctggatatgatgcggcaacagatggaggagcgattcattgctgccaatccttccaaa
gtgtcttttgagcccatcaccaccactctgcgccgaaagcaggagcacgtgtctgccggg
gtcatccagcgtgcttaccgtgcgcatcttattcggagaggcttcatctgcaagcgcttg
ctcagcagcaccaggctggagaacggcgggaccaatcaggacaagaaggagggaacgcct
tccactgcctcgctgccgtcctacgacagcgtgaccaaacccgagaaggagaaactggag
gagagcgaaggcaaagagggcaaaaaccaaaaagatgtcaaggagtccaagtgttag
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integrated database retrieval system
