Labeo rohita (rohu): 127155273
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Entry
127155273 CDS
T09007
Symbol
l1cama
Name
(RefSeq) neural cell adhesion molecule L1.2 isoform X1
KO
K06550
L1 cell adhesion molecule
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04514
Cell adhesion molecule (CAM) interaction
lroh04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
127155273 (l1cama)
04517 IgSF CAM signaling
127155273 (l1cama)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lroh04515
]
127155273 (l1cama)
04090 CD molecules [BR:
lroh04090
]
127155273 (l1cama)
04091 Lectins [BR:
lroh04091
]
127155273 (l1cama)
Cell adhesion molecules [BR:
lroh04515
]
Immunoglobulin superfamily
L1 family
127155273 (l1cama)
CD molecules [BR:
lroh04090
]
Proteins
127155273 (l1cama)
Lectins [BR:
lroh04091
]
I-type lectins (Siglecs)
127155273 (l1cama)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Bravo_FIGEY
Ig_VEGFR-1-like_5th
Ig_5
FN3_DSCAM-DSCAML_C
C2-set_3
Pur_ac_phosph_N
VEGFR1-3_N_Ig-like
C2-set_2
Ig_4
Ig_6
V-set_CD47
Ig_PDGFR_d4
Ig_MYOM1
YchO_Ig
Motif
Other DBs
NCBI-GeneID:
127155273
NCBI-ProteinID:
XP_050953349
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All DBs
Position
23:complement(12676962..12758002)
Genome browser
AA seq
1277 aa
AA seq
DB search
MPATSQQQVGSRGRCAALLLPLLLLSVAPRPGNATINIPSKYKIRDLKSPPVITAQPESV
TTFSADDITLTCEATGNPPPTFRWVKDGVEFDPSKDPELSVSRDSGTFSLTAKDGPIHQY
QGRYNCYASNDLGTAVSKEARIITENTPTLQKERKITKKVEEGESVVLPCNPPNSTVAPV
IHWMDKKLRHIQQNERVIQGRDGNLYFSHVTAADSRDDYTCNTQFPSARIIVLKEPINLT
VVPSNSVVRNRRPQMMRPTGSRSSYLVLSGQNLELECIVQGLPSPNIQWIRKDGVLSESR
TSKESYDRVLRFKNISESDSGEYQCTATNVQGIITHTYSVTVEAAPYWTKEPKSQLYAPG
ETVKLECKADGIPSPEVTWSINGNLLTDIDPDPRRSVKHGVLTLKNVDLSDTAVYQCKAV
NKHGSILINAYVYVIELSPQILTEDGLMYSVAEGQTIELACETFGSPRPNVTWEGETWGA
LVANPRMSQLLDGSLQISNASLNDSGQYTCTVSNSKITITAELDVLNKTVIVKPPLALRI
QRGKPATLTCEYQVDSRQDAPQVQWRKDQQKLSESSDSDKYMIDESTLIIPDVEEEDEGI
YTCEVITTLDIAEASGSITIVDRPDPPTQIQMTEPKDRSLTLSWTPGNDHNSPVLEYLIE
FEETEYERKEWEELTRVPGNNQRTTLSLKPFLSYRFRVIAINDIGKSDPSMYTDVFSTPA
AAPDSNPEGVRSDSINPGILVITWKEMDRRSFNGPGFLYKVMWRKVLGSGPSWHTQSVAS
PPFYVKDVGNFSAFDIKVQAINEMGEGPEPKSTIGYSGEDYPLEAPLNVAVDLINSTAIK
VVWAPINRETVRGRLQGYKIYLMHYGPESRHLRRERVREGKPSNISFVMTDSNEEKKVLG
DLQPYSHYALSVSVFNNKGEGPQSDPLTFHTPEGVPGPPSSLLLDSPSETEMILHWTPPI
QPNGVLKGYILQYQQVDKEDSPMQVVKISDHLVSHFTLKLDPHSRYRFYLRGYTAKGEGL
PIIREGATTLDGVPPSNISLSTGETSVNLTWVSKERQRNVGFFIHYLKKDGKGTWKRSER
VNSSQSFYTLQGLQSGSEYRLKIDFKNKTLWEDEIQTSGAKVMEVRQGFVTESWFIGLIS
ALVLLLLVLLILCFIKRSKGGKYSVKEKEEGQIDSEARPMNNEAFGEYRSLESDNEEKRT
ASQPSLCEDSKLCTDDALDDYANSNSVQTEVIMDESLASQSSGIRDVPDPGTQESSPLNP
ATAISHHGLPNSAALLD
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccacgtcacaacagcaggtgggcagcagggggcgatgcgctgctctcctgctc
cctctcctcttgctgtctgtggctcccaggcccgggaatgccaccatcaacatcccatcc
aaatacaaaataagagacttgaaaagccccccagtgattaccgcccagccggagtctgtc
accaccttttcagcagatgacatcacactcacctgtgaggcaactgggaatcccccaccc
acgttccgttgggtgaaagatggtgtggagtttgacccctctaaggaccctgaactctcc
gtgtccagagattctgggacgttttcgttgacagccaaagatggacccatccaccagtac
cagggcagatataactgctacgcatctaacgatctcggcacggcggtgtctaaagaggct
cgcatcatcacagagaacactcccactctacagaaggagaggaaaataacgaagaaggtg
gaggaaggcgagagtgtggtgctgccttgtaatcctcctaacagcactgtggctccggtc
atccactggatggacaagaagctgcggcacattcagcaaaacgagcgtgtgattcagggc
cgcgatggaaacttgtacttctctcatgtgactgcggcagacagtcgggacgactacacc
tgcaacactcagttccccagtgcgcgcatcatcgtcctcaaagagcccatcaatctcact
gttgtcccctctaattcagtggtgcgtaacagaaggccacaaatgatgcgacccactggc
tcccgcagctcctatctggtgctcagcggccaaaacctggagctggagtgcatagttcag
ggcctgccctctcccaatatccagtggatacggaaagatggagtcctgtctgagtcccgc
acatccaaagaaagttatgatcgagttctgcgctttaagaatatctcagagtctgacagc
ggcgagtaccaatgtaccgccacaaatgtgcaaggcataatcactcacacctacagcgtc
actgtggaagctgccccatattggactaaagaaccaaagagccagctgtacgccccggga
gagacggtcaaactggaatgtaaggctgacggcattcccagccctgaggtcacctggagc
atcaatggcaatcttcttactgatattgacccagaccccagacgcagtgtgaaacatggc
gttctcactctgaagaatgtggacctcagtgacactgcggtgtatcagtgcaaagcagtc
aataagcatggatctatcctcatcaatgcctacgtctatgtcatagaactgtctccccag
attctgacagaagatggtctgatgtattctgtggcagagggacagacgattgagctggct
tgtgagacctttggctctccacggcccaatgtcacatgggagggtgagacctggggtgct
cttgtagccaacccaaggatgagtcagttactcgatggctctttacagatcagtaacgcc
tcccttaatgacagcggccagtacacctgcactgtcagcaacagcaaaatcaccatcact
gctgagctggacgtactcaataagacagtcattgtcaaacctcctttggctctgagaatc
caacgggggaagcctgctaccctcacctgtgagtaccaggtggactccaggcaggacgcc
cctcaagtccagtggaggaaggaccaacagaagctcagcgagtcttctgattcagacaag
tacatgatagatgaatccactctcattatacctgatgtcgaggaagaggatgaagggatt
tacacctgtgaagtcattaccactctggatatagctgaagcgagtggctccatcactatc
gtcgaccgaccagatcctccaacccaaatacagatgaccgaacctaaagaccgcagtctc
actctcagctggacacctggaaatgatcacaacagccctgtgctagagtatttgattgag
tttgaggagactgaatatgaaagaaaagaatgggaggagctaacccgtgtcccaggcaac
aatcagcgaactaccctttccctaaagcctttcctttcctaccgtttccgagtcatcgcc
atcaatgacatcggcaagagcgacccgagcatgtacacagacgtcttttccacaccagct
gctgctccagacagtaaccctgaaggagtgcgcagtgattccatcaacccaggcatcctt
gtcatcacatggaaggaaatggacagacgtagtttcaacggcccaggttttctctataaa
gtgatgtggagaaaagttttaggcagcggtccgtcctggcacacccaatctgtcgcctct
ccacccttctacgtcaaagatgtgggcaacttttctgcctttgacattaaagtgcaagct
attaatgagatgggagaaggtccagagcccaaatccaccataggatactctggagaggac
tacccgcttgaggcccctttgaatgtggcagtggatctgatcaacagcactgccattaaa
gtggtgtgggcgcccataaacagagaaactgtgagaggtcgtttgcagggttacaagatt
tatctaatgcactacggcccggaaagcagacacctcagacgggagcgtgttagggagggg
aagccaagcaacatctcgtttgtgatgacagacagtaatgaggagaagaaggttctggga
gatctgcagccctactcccattacgcactgtctgtgagtgtcttcaacaataaaggagaa
ggtccccagtctgaccccctcactttccacactccagaaggagtacctggtcctccatca
tctttactgctggatagcccatcagagacagaaatgatactgcattggactccacccatc
cagccgaacggtgtcctgaaaggatacatattacagtatcaacaagttgataaggaggac
agtcccatgcaagtggtaaagatcagtgaccatctcgtgtctcatttcaccttaaagctg
gaccctcacagccgttaccgcttctacctacgaggctacactgctaagggagaaggactg
ccaatcatcagggagggagctacaacactggatggagttccaccctccaacattagttta
tcgaccggagagacatccgtcaacctgacatgggtatcgaaagaaagacagaggaacgtg
ggattctttattcattacctgaaaaaggatggtaaaggcacatggaagcgttctgaaaga
gtgaacagctctcagtctttttacacactgcaggggctccagtctggatctgagtaccgt
ctgaagattgactttaaaaacaaaactttatgggaggacgagattcagacatcaggagca
aaagtcatggaggtgcgtcaagggtttgtgaccgagagctggttcatcggactcatcagt
gcccttgtgctgttgctgctggtactgctcattctgtgtttcataaaacgaagcaaaggt
ggaaaatactcagtcaaagaaaaagaagaaggccagatagattctgaagcgcggccaatg
aataatgaggcttttggagagtacagatcgctggagagtgacaatgaggagaagcggacg
gccagtcagccatctctgtgcgaggatagtaagctatgtaccgacgacgctctagatgac
tacgccaacagcaacagcgtacagaccgaggtcatcatggacgagtcgctggccagtcag
agcagcggaatccgagatgttcctgaccccgggactcaagaaagttcccctctaaatcct
gccacagccatctcccaccacggcctgcccaactccgccgccctccttgactag
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