Labeo rohita (rohu): 127155604
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Entry
127155604 CDS
T09007
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127155604 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lroh03032
]
127155604 (topbp1)
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127155604 (topbp1)
DNA replication proteins [BR:
lroh03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
127155604 (topbp1)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
127155604 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
127155604
NCBI-ProteinID:
XP_050953892
LinkDB
All DBs
Position
24:20243188..20263572
Genome browser
AA seq
1521 aa
AA seq
DB search
MSKGNKDAYIVKFIERNGQKSDLALQAFKAIVELQSEKYVQTLDEEAALELDHSDKSLFV
FSDFTSNAFDHCRRLGCRIVSPLVVLFCLQKQRCVPKAEQPVYNMAMADVTISCTNLDKE
ARSEVMDLVQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPILLPSWVKACWEKS
QESVFHHSELNMEDYQCPVLKGCTVCVTGLSTVERKEVQRLCEQNGGNYTGQLKMNECTH
LIVSEPTGQKYEFARKWNVYCVSLHWLFDSIEKGFCQDESRYAVERGQKRAEEKAGRPNT
STPTGPSRSKEEGPSLLGLSHISNISMNVNETALTTAGISHIETPDPVDSFDITVCRVDD
LLDGCKLYLCGLSGKKLEKLRRMVNSAGGLRFNQPSQELTHIVMGEPDQGVKVFLDKATH
RPHIVTVQWLLDSFSRGSLLPEDGYFHPSFLPPAPAAVDMPAPLKAAPRASRPSVAPPPA
PSPGRQARVEEDLLSQYMETDQTVVELPQAANSTSSRQSILLPEPPPAGKDSTLVEASEA
GLFSGKRFILVGFGAEAEAQLSELVMENSGKILVGRSRAVAHYAIVPLLGCDVEATVDEV
ATDTWLAMCVEQQCVLPLASHPLFTPVAVREGFSPLKDCVLSVSQFTGAERESLIQLAKH
LGASVQDYFVRTANQRKGMLASTHLVLQTPEGTKYQAAQKWSLPAVTIRWVLESARTGKC
ADEGRYLVDLPPSPERTEDSFVGASQKDPPPLRLLQRSPELPLLGPQNSAAITPLDTARF
QSRTVRSAVRKLKQGEEEQVDVATPGQEGAKGAQQKDSSLHLDTPSRFLSRDKLFGPSFN
TKDVFDHLQTPGNKPQQGQGAETPLSEVIERNLKAAVANSNRSHVTSLAAMTASPQLGKE
PEPEVEQKAAAPLSGVVVCVSKKLSKKQSELNAVAASLGADFRWSCDDSVTHYIYQGKVG
DNSKEYKAVKERGLHIVSQHWLQACADEQKHVSESLYPFTFNPKMSLTMSQVADSTQRSP
PASTPRTRLRAFTENEETRLSPGDNITDISTPQRVSVGEPEKDQTVSTERNLTETLEMRE
SLQRQLQEIMSATKLTSGRRGSSRLARTGSGGLDSPHTPDSLGRMGRRSRTLEALRMSRQ
VAVDLNTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSETLAIVPPPLSDHTTSG
RDSMTDSELVEMAAFEVIDAQLKPKVTSPPADTLQNPVTPEAPPLAFPTSKPAVPSIPQV
KDEEEVKDPPRFLLSSLNPQERIDYSHLIEELGGVVLEKQSFDPSCTHVIVGYPLRNEKY
LAAMAAGKWILHRSYLEACRSEGHFIEEEQYEWGSSSILDALPSINSQQKRLALAAMRWR
KTLQGSSNKEVHGAFGGWTVMLNIDQAREAGFRRLLQSGGAKVLPDPSPSLFKETTHLFV
DFSRLKPGDVRVDISEAAAQGVKCLKPEYIADYLMQEPSPSMDAYYLPGAAADDLEKVQD
TSSRKRKASGEVSTLKKSRVR
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaggcaacaaggatgcatacattgtgaaatttattgaacgcaatggacagaag
agtgatctggctctccaagcctttaaggcaatagtggaactgcagtcagagaaatatgtg
cagacgctggatgaggaagctgcactagagctggaccacagtgacaagtccctgtttgtt
ttcagtgacttcaccagcaatgcctttgaccactgcagaaggctgggatgcaggattgtg
agtcctcttgtagtgctgttctgtctacagaagcagagatgtgttcccaaagcagagcag
cctgtgtacaacatggccatggctgatgtcactatctcctgcaccaaccttgacaaagag
gcacggagtgaagtgatggatcttgtccagttgatgggtggacgggtctaccgtgatctc
aatgtgtccgttactcacctggtggcaggtgaagtggggagtaagaaatacctggtggct
gcaagtcttgggaagcccattcttttgcccagctgggtcaaagcatgctgggaaaagtct
caggagagtgttttccatcactctgagctgaatatggaggactatcagtgtccagtcctg
aaaggttgtacggtgtgtgtgacaggactctctactgtggagcgtaaagaggttcaaagg
ttgtgtgagcagaatggaggcaactacacagggcagctcaagatgaacgagtgcacgcac
ctcattgtcagtgaacccacaggtcagaaatatgagtttgcccgtaaatggaacgtatac
tgtgtgtccctgcactggctgtttgatagcattgagaagggcttctgtcaggatgagagc
aggtatgctgtggagcgtggacagaagagagcagaggagaaggcaggcagacccaacacc
tccactcctacaggaccaagcaggagcaaagaagaaggtccctcacttctgggattgagc
catatttccaatatcagtatgaatgtcaatgaaacggccctcactacagctggaatcagc
cacatagagactcctgatccagtcgactcatttgacatcactgtttgtcgagttgatgat
ctgttggatggctgtaagttatacctgtgtggcttatcaggaaagaaactagagaaactg
cggcggatggtgaactctgccggagggctgcggttcaaccagcccagccaagagctgaca
cacatagtaatgggtgaaccagaccagggggtcaaagtcttccttgacaaagccactcac
agaccccatatagtgactgtgcagtggttgctggatagtttctctcgtggttccttgctc
ccagaggatggctactttcacccctccttcctgccccctgccccagccgctgttgatatg
cctgctcctcttaaagccgccccccgtgcctccagaccctctgttgctcccccacctgct
cctagtcctggccgacaagccagagtggaagaagacctgctatcacagtacatggagact
gaccagactgtggtggagcttcctcaggctgccaatagtaccagcagtaggcagagcatt
ttgcttccagagcctccacctgcagggaaggactctaccttggttgaagcatcagaagct
ggcctgttttcagggaagcgctttattttggttggttttggagctgaggctgaagcgcag
ctctcagagttagtcatggaaaactctgggaagatcttggttggacggtcgagagctgtg
gcgcattacgccattgtgccactgctgggctgcgatgtggaggccactgtagatgaggtc
gcaacagatacctggctggccatgtgtgtggagcagcagtgtgtgttgccactagcctct
catccactgttcactccagtagcagtgagggaaggcttctctcctctcaaagactgtgtg
ctgtccgtcagtcagttcactggagctgagagagagtctctcattcagctagccaaacac
ctgggagcaagtgttcaggattactttgtgcggactgctaatcagagaaagggaatgctg
gccagcactcatttggtactacagactcctgagggcaccaagtaccaggctgctcagaaa
tggagtctacctgcagtcacaatccgctgggttttagagtctgccagaacagggaagtgt
gctgatgaaggacgatacctggttgacctgccaccttctccagagagaactgaagacagt
tttgtgggagcatctcagaaagatccgccacctctgcgcctccttcagcgctctccagag
ctaccactactgggcccacaaaatagcgctgccatcacccctctggacacagctcgcttt
cagagccgcaccgtccgctcagcagtcaggaagttgaaacagggagaggaagagcaggtg
gatgtcgccaccccaggacaggagggggctaaaggagcacagcagaaagattcttccctc
catctagacactccctctcggttcctgagcagggacaaactctttggaccctcatttaac
acaaaggatgtgtttgaccatttacaaactcctggtaataagcctcagcaaggtcagggg
gcagagactcctctgtctgaggtcattgaaaggaaccttaaagctgcagttgccaacagt
aaccgcagccatgtcacaagccttgctgctatgactgccagtccacaactgggaaaagag
cctgaacctgaggtggagcagaaggctgcagctcctctcagtggggtggtggtgtgtgta
agcaagaaattaagcaagaaacaaagtgaacttaatgcagttgccgcctctctgggcgca
gacttcaggtggtcatgtgacgactctgtcactcattatatctaccagggtaaagtggga
gacaacagtaaagaatacaaagctgtcaaagagagaggactgcatatagtgtcacaacac
tggctacaggcttgtgcagatgagcagaagcatgtgtctgagtcactctacccttttaca
ttcaacccaaaaatgagcctcaccatgagccaggtggcagatagcactcagaggtcacct
cctgcttccaccccccgcaccagactcagggcatttacagaaaatgaggagaccaggctt
agtcctggtgacaacatcacggacatctcaacccctcagcgcgtcagtgtgggagagcct
gagaaagatcagaccgtcagcactgaaagaaatctcacagaaacacttgagatgagagag
agtcttcaaaggcaacttcaggagatcatgtctgcgactaaactgaccagcggtcgtcga
ggttcctcgcggttggccagaacaggctcagggggactagactcaccgcacaccccggac
agcctggggcgaatgggaagacgcagccgcactttagaggccctacggatgtctcgtcaa
gtggctgtggacctgaacacagaaccgtctcagagtgagcagatcgtgtgggatgacccc
acagcaagagaggagagagctaaactggctgataacctgcagtggcctggcagcccctcc
cagcactctgaaaccctcgccattgtcccaccgcccctttctgaccacacaaccagtggc
agggactccatgactgactctgaacttgtggaaatggctgcatttgaagtaattgatgca
cagctgaagccaaaagtgacctctcctccagctgacacactacagaaccctgttacacct
gaagcaccacctcttgcttttcccacctctaaacctgcagtcccttccattccacaggtt
aaagatgaggaggaggtaaaggatccaccacgcttcctgctgtcttcattgaacccacag
gaacgcatcgactatagtcatctcatagaggagttaggtggtgttgtgctggagaagcag
agttttgaccccagctgcactcatgtgattgttggttatcctctgaggaatgagaagtat
ctggccgctatggcagcgggcaagtggattcttcaccgctcgtatctagaggcctgccgt
tcagaaggacacttcatagaggaggagcagtatgagtggggcagcagctctatcctggat
gctctcccatctatcaactctcaacagaagagactggcactggcagccatgcgatggaga
aaaacactacaaggcagctcaaacaaggaggtacacggagcgtttggcggctggactgtg
atgctgaatattgaccaggccagagaggctggatttagacggctgctgcagtctggggga
gccaaggtgttgccagatccttctccctcactgtttaaagagaccactcacctgtttgtg
gattttagccgattaaaaccaggggatgtcagagtggatattagtgaggctgcagctcag
ggggtcaaatgtcttaaaccagagtacattgctgattacctcatgcaggaaccctctcct
tcaatggacgcttactatcttcccggtgcagctgcggatgatctagaaaaagttcaagat
acatcttcacgcaaacggaaagcctctggggaagtgtccacattgaagaagagtcgtgtg
agatga
DBGET
integrated database retrieval system
