Labeo rohita (rohu): 127155606
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Entry
127155606 CDS
T09007
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04140
Autophagy - animal
lroh04148
Efferocytosis
lroh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127155606 (vps41)
04148 Efferocytosis
127155606 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
127155606 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127155606 (vps41)
Membrane trafficking [BR:
lroh04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
127155606 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_Prp19
WD40_WDHD1_1st
zf_RING_Vps8_fungal
TPR_7
Beta-prop_EML_2
zf_RING_Vps8
TPR_17
zf-RING_5
Vps39_1
zf-Vps39_C
Beta-prop_IFT140_2nd
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
127155606
NCBI-ProteinID:
XP_050953897
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All DBs
Position
24:complement(20343860..20377787)
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AA seq
854 aa
AA seq
DB search
MAEVEEQGRKLSEESTDESEEEDTEEEPKLKYERLTNGVTEILQKDAASCMTVHDKFLAL
GTHFGKVYLLDIQGNVTQKFEISSVKINQISLDESGDHVGICSEDGKVQVFGLYTREGFH
ENFDCPIKVVALHPQFSKSNNKQFVTGGNKLFLYEKNWLNRWKTSILHEGEGNITNVKWR
ANLIAWANNLGVKIYDISSKQRITNVLRDNNNLRPDMYPCSLCWKDNTTLIIGWGSSVKI
CVVKERDPTEMRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYYVKENSEHMEEEFRT
RPRLDIIQPLPEGCEEISSDALTVRNFQENQCRDYRLEHSEGESLFYIISPKDIVVAKER
DQDDHIDWLLEKKKYEEALMAAEISFKNIKRHDVQKIGMAYINHLVERGDYDAAARKCQK
VLGKNMDLWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKTDYEGFATLI
REWPGELYNNMAIVQAVNEHLKRDPTNSMLLTTLAELYTYDQRYDRALEIYLKLRHKDVY
QLIHKHNLFSAIKDKIVLLMDFDKEKAVDMLLDNDDKISMDKVVEELKDRPELLHVYLHK
LFKRDHHKGQKYHERQISLYAEFDRPNLLPFLRESMHCPLEKALEICQQRHFVEETVFLL
SRMGNCRRALQMIMEELADVDKAIEFAKEQDDRELWDDLISYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLQRMHRTQK
RGVRVDEENICESCHTPILPSDTAQAFGVVVFHCRHMFHKECLPSPGNVPGIQYCNICSA
KRRGPGSGILEMKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtagaggagcagggaagaaaactaagtgaagaatccacagatgagtcagag
gaggaggatacagaggaggagcctaaactgaagtacgagaggctgaccaatggcgtgaca
gagatcttgcagaaggatgcggccagctgcatgacagtacatgacaagttcctggctctt
gggacacactttgggaaggtttacctgctggatattcaaggaaacgttacacagaagttt
gaaattagttctgtgaaaataaaccagatcagtctggatgagagcggtgatcatgttggc
atctgctctgaagatggaaaggtgcaagtgtttggcctgtacaccagggagggcttccac
gaaaactttgactgtcccatcaaggtcgtggcactgcaccctcagttcagcaagtccaac
aataagcagtttgtgactggaggaaataagcttttcctttatgagaagaactggctgaac
cgttggaagacctctattctgcatgaaggagagggaaacatcaccaatgtgaaatggaga
gccaatctcattgcctgggcaaataatttgggtgtgaaaatttatgacatcagcagtaaa
cagcgcatcactaatgtgttgcgagacaacaacaatctcaggccggatatgtacccctgc
agtctgtgttggaaagacaacaccacactgatcatcggctggggctcttctgttaagata
tgcgttgttaaagagcgtgacccaacagaaatgagagatctacccagtcgctacgttgag
attgtgtcagcatttgagacagagttcttcattagtggtctggcgcctctagcagatcag
ctggtcactctgtactatgtcaaggagaactctgagcacatggaggaggagttcagaaca
cggcctcgtttagacataatccagccattacccgagggctgtgaggagatctcatcagac
gctctcacagtacgaaacttccaggagaaccagtgccgggactacaggcttgaacactct
gagggagagtctctcttctacatcatcagtcctaaagacattgtagtggctaaagaaaga
gaccaggatgaccacatcgactggcttctagagaagaagaaatatgaggaagcactgatg
gctgcagagatcagcttcaaaaacattaaacgccatgatgtacagaaaattggaatggcg
tacatcaatcatctggttgagagaggagattatgacgcagctgccagaaagtgtcaaaaa
gtgcttggaaagaacatggatctctgggagaatgaagtgtacagattcaaaaccattgga
cagttgaaagccatcagtcagtacttaccaagaggagacctccgtcttcgaccagcaatt
tatgagatgatacttcacgagttcctcaagactgactacgagggttttgccacactgatt
cgtgagtggccgggagaactgtataacaacatggctatagttcaggcagtaaatgaacac
ctgaagagggaccccaccaacagcatgcttctcaccacactggctgaactctacacgtat
gatcagcgttatgatcgtgcgctggagatctacctgaaactgagacacaaagacgtttac
cagctcattcacaaacacaacctgttctctgcaatcaaggacaagattgtcctgctcatg
gatttcgacaaagagaaagctgttgacatgctgctggataatgatgataaaatatcgatg
gacaaagttgtggaggaattaaaagacagacctgagctcttacatgtgtatttgcataag
ctgtttaagcgggaccatcataaggggcagaagtaccatgagaggcagataagtttgtat
gctgagtttgaccgacccaacctactgcccttcctcagagagagcatgcattgcccacta
gagaaggctttggaaatctgtcagcagaggcactttgtagaagagacggttttcctgctc
agtcgtatgggaaactgtagacgtgccctgcagatgatcatggaggagctggcggatgtg
gacaaggccatcgagtttgccaaagagcaggatgacagagaactctgggacgatctcatc
tcttactctatagacaaaccaccatttatcacaggccttttgaataacatcggaacccat
gtggaccccatccttctcattcaccgcattaaagaagggatggagattcccaacctcaga
gactcgctggtcaagatcctacaggactacaatctacagatcttactgagagagggctgt
aagaagatcctggtggcagattcactgtctcttctacagaggatgcacaggacgcagaag
agaggagtgcgggtggatgaagaaaacatctgtgaatcctgccacactcccattctacca
tcagacacagctcaggcattcggggtggtggtgtttcactgcagacacatgttccacaag
gagtgtctcccatcccctggaaacgtccctggaatacagtattgtaacatctgcagtgca
aagcgaagaggaccgggcagtggcatactggagatgaagaaataa
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