Labeo rohita (rohu): 127155733
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Entry
127155733 CDS
T09007
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127155733 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lroh01009
]
127155733 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127155733 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
lroh03029
]
127155733 (rb1cc1)
Protein phosphatases and associated proteins [BR:
lroh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127155733 (rb1cc1)
Membrane trafficking [BR:
lroh04131
]
Autophagy
Autophagosome formation proteins
ULK complex
127155733 (rb1cc1)
Mitochondrial biogenesis [BR:
lroh03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
127155733 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
127155733
NCBI-ProteinID:
XP_050954115
LinkDB
All DBs
Position
24:complement(5269237..5295789)
Genome browser
AA seq
1625 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQAKYKIAIQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILSDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCLFCERLVHDEHLQHQGWAAIMANLDDCTLSYQRLLMKFDTAYTNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRQSYRESLEKSSSPHPRTDEEDENGDEEVGE
TSTQSAILCPADSQKNRKSPSPVSASGEASSQASSSPQDRLKSNCNLKAALEEEEESPER
GATPSFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLTECRETITKLDNQN
MKAIKGLEDRLYALDQMIASCKRLVNEQQELAQGFLANQKRAENLKDTSVLPDLCLSHAN
QLMIMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTE
LLERVRVVDALSTVPQMYCIAVVEVVRRKMFIGHYRQWANALVKDGKNLYEVEKVKRETF
GKLFRKSFLRNRLFRGLDSWPPSSFCTRKPRKFDFELPDISLTDLQYLKSCCPLEVQPYL
RVPTLCDFEPLNHHVEVLHQLVQAAQSVDEMSQTITDLLNEQKISCSQSAQRSTTLTPRS
ESTTEITSTSTKTLSTLSLKATDCQPLALPGPLEDLSPDSIDAQTFDFETIGHPNMDPVL
QQGSLDLDSLAESPESDFMSAVNEFVIEENLMSPNPISDPTSPEMMVESLYSSVINAIDS
KRIQDTTTLEKENSKIAVLKLSADRYRSAAEESQNNLRKVKDDLYHFRGLVLKEQRDFGF
ALKTMTIEVRNALNSVRYCHEEELRETQQTSLQSLKDDHEKQIQTLTEELEGNRKIVRDV
QRAMLELEGLVERKEKEISQLESERERSMQELQDLHKQTTQDLEEKILKQSEELKAALLA
KDELTGQLENLHFEIEQSQQKIRQEMEKAEKVHLQELEERLKQHHQAELESLRLEKESAL
DKLVQENLVKLRDLMDSHSAELKERDGRSKDLEARITELADARCKLEVEMALKEAEMEDM
RLQYEEAKSTQEEVLKAELASQTTTLQRQIDTLNQQLQQKNEDYEVGLAELRALMRLEKD
HCISELVDRHEEESTLLRQEFSTLKQKSQDAEKDCEERVQKIQRDHQDKLDALQRKKKDE
EKTFQEKELELKTDIGDLQAENALLSGRLEQERVEAMERAEKEKEEAVKTALQEALRDFQ
LQKEEIETRLLRQIDLLENQLKDRQSTDIVASTVEKTETGMETSAALSLDSGQWNEERAS
LLAKLEILERTKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINDLSEKLKNLTQQQ
EKDKGLIETLSEDRASILQEKKKMEEELNRLRSTVLVSSSFFPPNPIPVITEAHGACGPV
HAEALSPSTPDPERLASMAAFKDEERVESAVEASMMTVHCSDNPMLSEEKQRILILERTL
HMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVGPT
LYFLHSESLTALDLKPASGATRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVP
WNKKV
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgtttcaagtcaacaacggaagcacattgacatttgacactgaactt
gctgtccaaactgttttggaccttaaacatgccattcaggccaaatataaaattgcaatc
cagcaccaggtgctggtggtcaatggaggggagtgtatggtggcagagaggcgcgtgtgc
agctacagcgccgggacggacaccaacccgatcttcttattcaacaaagagatgatcctg
tctgaccgagctccaactatccccaaaacgaccttctccattgagaatgagatggagctg
aaggtggaggagtcactcatgatgcctgctgtctttcacaccgtcgcttcccgcactcaa
ctggctgtggaaatgtttgaggttgccaagaagctttgcttgttctgtgagcgtctggtc
catgacgaacaccttcagcaccagggatgggcggccatcatggctaacctggacgactgc
accctatcctatcaaagactcctcatgaaattcgacactgcttacacaaattaccaacag
gatttcgaagacatcaaattaaaactcacaaagcttggcactgctgtctcggtcatggcg
aagattccactcctcgagtgtttgactcgacagagctacagagaaagcttggagaagtcc
agctcccctcaccctagaacagatgaagaagacgagaatggggatgaggaagtaggtgaa
acatccacccagtccgctatcctctgtcccgctgacagccagaagaatcggaagtcgccc
tcgccggtctctgcgtcaggagaagcgtcgtcccaggcgtcttcctctcctcaggacaga
ctgaagagcaactgtaatctaaaagcagctctagaggaagaggaggagtctccggaaagg
ggagccacaccctctttcaatgtcacgcttttggattggatcaacgttcaggacagacct
aatgatgtggagtcagtagtgaggaagtgttttgactcaatcaacaggctcgacccacga
attatccaaccctttctgactgaatgccgtgagacgattaccaaattggataatcagaac
atgaaggccatcaaaggtcttgaagacagattgtatgcgcttgaccaaatgatagcaagc
tgtaaacggttggtcaatgaacagcaggaacttgctcagggatttcttgccaatcagaag
agggctgaaaacctgaaggacacctcggtgctgcctgacctgtgtctgagtcacgccaac
cagctgatgatcatgctgaccaatcacaggaagctactagacatcaagcagaaatgtacc
actgccaaacaggagctcgccaacaaccttcaagttcgtctcaaatggtgctgctatgtg
atgcttcacgctgatcaggatggagagaagctgcaggctctcctgaggctgctgacggag
ctgctggagcgcgtgcgggtggtagatgcgctcagcacagtgccacagatgtactgtatt
gccgttgtggaggtggtcagacgcaaaatgttcataggacactacagacaatgggccaat
gctcttgtcaaagatgggaaaaacctctatgaggtggaaaaagtaaaaagggaaaccttt
gggaagctcttcaggaaatcgttcctcagaaaccgcttgtttcgaggactggactcatgg
ccaccctcttcgttttgcacccgaaagcctcgaaagtttgattttgagcttccagatatt
tctctgactgacctgcagtatctcaagtcctgttgtcctttagaggttcaaccttacctc
agggtccccacactgtgtgactttgagcctcttaaccatcatgttgaggttctccatcag
ctggttcaggctgcacagagtgtggacgagatgtcgcaaactatcacagacctactaaat
gaacaaaagatttcctgtagccagagtgctcaaagatccaccacgttaacacccagatct
gaaagcacaactgaaatcacctctacctccaccaaaactttgtccactctcagtttaaaa
gcaacggactgccaacccctggcgcttcctggtcccttggaggacctatcacccgacagc
atcgatgcccagacctttgactttgaaaccattgggcaccccaatatggatcctgtatta
cagcaaggctcgttggacttggactcgctagcagaaagtcccgagtcggacttcatgtca
gcagtaaacgagtttgttattgaggagaacttgatgtcacctaatcccatcagtgatccc
acaagcccagagatgatggtggagtctctttactcttccgttattaatgcaatcgatagc
aagcgcatacaggacactactacacttgagaaggagaattcaaagattgcagtgctcaag
ctgtcagcggacaggtatcgttctgctgcggaagagtcccaaaacaatttgagaaaagtt
aaagatgacctttaccactttcgaggtcttgttttgaaggagcaacgagactttggattc
gccctgaaaacaatgactattgaggttcgaaatgctctcaacagtgtcagatactgtcat
gaggaggagctgagagaaactcaacaaaccagtctacagagtttgaaggacgatcatgaa
aaacagatacaaactcttacggaagagctggaaggcaatcggaagattgttcgagacgtc
cagcgagcaatgctggagttggaggggctcgtagagcgcaaggagaaggaaatatcccag
ctggagagtgagagggaacgctctatgcaagaacttcaagatcttcacaagcaaaccacg
caggatcttgaagagaagatcttgaagcaaagcgaagagctgaaagctgcgttgctggcc
aaggacgaactcactgggcagctggagaacctgcactttgaaatcgagcaaagccagcaa
aaaatcagacaggagatggagaaggcagagaaggtgcaccttcaggaactggaggagcgg
ttaaaacaacaccatcaagctgagcttgaatctctcagattggaaaaagaaagtgcactt
gacaaacttgtccaggagaacctggtgaagctaagagatctgatggattcccattctgcc
gagctcaaggaacgcgatggacgctcgaaagacttggaggctcgcattacagaacttgcg
gacgcccgctgcaaactggaagttgagatggctcttaaagaggctgaaatggaggacatg
agactccagtacgaggaggctaaaagcacccaggaggaggtgttgaaagcggagcttgct
agtcagacaaccaccttgcagaggcaaatcgacacgttaaatcagcagctccagcagaag
aatgaagactacgaagtcggcctggccgagctccgagcgctcatgaggttagaaaaagac
cactgcatctctgaactcgtggatcgccacgaagaggagagcaccttgctccgccaagag
ttttcaactctcaagcaaaagtcgcaggatgcagagaaagactgcgaggaacgggtccag
aagattcaacgcgatcaccaggataagcttgatgccttacagaggaaaaagaaggatgag
gagaagactttccaggagaaagagctagagctaaagactgatatcggagacttgcaggcg
gaaaatgcactactgtcgggaagactggagcaggagcgagtggaggcaatggagagggcg
gagaaggagaaagaggaggcagtcaaaactgctttacaagaggccttaagagactttcaa
ctgcaaaaagaggagattgagacaagactgttaagacaaattgatctacttgaaaatcag
ctcaaagacagacaatccactgacatagtggcatctactgtagaaaagacagagactggt
atggagaccagcgctgcattgtcattggacagtggccagtggaatgaagaaagggcatcg
cttttggccaaactagagatcctggaacgcacaaagaacgaggagatgcagaacctaaag
acctctctcattgctgaacagcagacaaatttcaatactgttctgacccgggaaaaacta
aagaaagaacaaatcatcaatgatctctctgagaagctcaaaaacttgacgcagcaacaa
gagaaagataaaggcctgattgaaacgctctccgaggaccgtgcctccattcttcaggag
aagaagaagatggaggaggaactaaaccgtctgcgaagcaccgtccttgtatcttcatcc
ttctttccgcccaatccaatcccggtcatcacggaagctcacggcgcctgcggccccgtc
cacgcggaagcgctctcgccatccacccctgatccagagagactggcgtccatggctgcg
ttcaaggatgaggagagagtagagtcagctgtggaggccagcatgatgacagtgcactgc
agcgacaaccctatgctgtctgaggagaaacagcgcatactgattttggaaaggacctta
catatgaaggaagaagaaaacaaaagacttagtcaaagattgatgtcacagagtatgtcg
tctgtctcgtcacggcactctgagaaaatcgccattcgagattttcaggtgggcgacttg
gttctcataatcctggacgagaggcacgataattacgttctcttcaccgttggtcccacc
ctttatttcctgcactcagagtccctgacagcactggacctcaaaccagcatcaggagcg
acaagacggccgtgggttctaggaaaagtcatggagaaggaatattgccaagccaaaaag
gctcaaaaccggttcaaagttcctctcggcaccaaattctacagagtaaaggccgtgcca
tggaacaagaaagtgtaa
DBGET
integrated database retrieval system
