Labeo rohita (rohu): 127155977
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Entry
127155977 CDS
T09007
Symbol
scn5lab
Name
(RefSeq) sodium channel, voltage gated, type V-like, alpha b isoform X1
KO
K04838
voltage-gated sodium channel type V alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04261
Adrenergic signaling in cardiomyocytes
lroh04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
127155977 (scn5lab)
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
127155977 (scn5lab)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127155977 (scn5lab)
Ion channels [BR:
lroh04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
127155977 (scn5lab)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
IQ
DabA
CcmD_alt
Motif
Other DBs
NCBI-GeneID:
127155977
NCBI-ProteinID:
XP_050954576
LinkDB
All DBs
Position
24:complement(1222203..1409898)
Genome browser
AA seq
1947 aa
AA seq
DB search
MAAILFPPGPDSLHRFTRESLAGIERRIAEEEARNAKEYQEDLGDVETPKSRADLEAGKQ
LPRIFGDIPPGLVGVPLEDIDPFYFQNKRTFIVLNKGKAIFRFSATSALYIFSPFHPVRR
ASIKILVHSLFSLFIMCTILTNCCFMAMSEPAQWAKYVEYTFTGIYTFESLIKILARGFC
IGPFTFLRDPWNWLDFSVIVMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLADVMILTVFCLSVFALIGLQLFMGNLRQKCVRSTAHCLNTTLPSYNNSTFFC
NNRTWSSLENFITNEDNYFKVEGAKDALICGNASDAGKCPDGFECMKTGRNPNYGYTSFD
TFGWAFLSLFRLMTQDYWENLYHHTLRSAGKAYMVFFVVVIFLGSFYLVNLILAVVAMAY
EEQNQATIAEALQKEQEFQLAMEQLKKEQQAAQKAQETESILTADVSPFSSQDKGNLDRR
KSSRPLSEGTEDGSNDKSAKIDTIEGMKQTHSLLVRTLSLRARRESQVSIFNFRPPNKDS
EVDFADDEFSNHGDSDSRGGSLALPWSRRRTSAQSTCSHSSQFFFPSLNINGKLFVAIDQ
NGISGQGPLSPLPLPTCTMEKVKEESGHNSTNELSSMLLPQLPQEGRDRALSATSYITDA
MEELEEAQQKCHPCWYAFAHKYLVWMCCPGWLKLKEWVKFMVNDPFLDLAITICIVLNTL
FMALEHYPMTDEFNRMLSVGNLVFTGIFTAEMVLKIIALDPYYYFQQGWNIFDSLIVSLS
LMELGLSNVEGLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFI
FAVVGMQLFGKNYESCVCKISKDCTLPRWHMKDFFHSFLIVFRVLCGEWIETMWDCMEVA
GQPLCILVFMLVMVIGNLVVLNLFLALLLSSFSADNLSAPDEDGEMNNLQIAIARIQRGM
LWLRQALCDFFNGNFKRRRQKAKEAKAMLKLKRLSQQAHWAEGNGTAGVIERSGEDDSYM
TNPNLTISVPIAPGESDVEFPEEEEEDEDDASESSEEEEEQEETKPRDDTSLSEGSTIDL
RKPGEEEDEYSEMAEEAMDPENCFPDVCVRRFQCCEINTSEGLGRAWWRLRKTCYQIVEH
SWFETFIIFMILLSSGALAFEDIYIEQRKVVKVVLEYADKIFTYIFILEMTLKWIAYGFR
KYFTNYWCWLDFLIVDVSLVSLVANTLGYSDFAAIKSLRTLRALRPLRALSRFEGMRVVV
NALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGRCVNRTGFIYNASYINNMTECME
MNSTQYYWTKVKVNFDNVGAGYLALLQVATFKGWMEIMYAAVDSRSVEEQPIKENSLYMY
LYFVIFIIFGSFFTLNLFIGVIIDNFNQQKRKLGGQDIFMTEEQKKYYNAMKKLGSKKPQ
KPIPRPPNPIQGFFFDLVSKQAFDIMIMLLIILNMVTMMVETDEQSPSIEYILYYINLAF
IVIFTTECIIKLIALRCYFFTISWNIFDFVVVILSIVGIVLADIIEKYFVSPTLFRVIRL
ARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMANFAYVKKQGG
IDDMFNFETFGNSMICLFQITTSAGWDNLLSPILNNSPEECDPDVPHTGTNVRGNCGNPS
VGITFFVTYIIISFLIVVNMYIAIILENFSVATEESTEPLSEDDFEMFYEVWEKFDPEAT
QFIEYSKLSDFADSLSEPLRIGKPNKIKLISMDLPMVSGDKIHCLDILFAFTKRVLGESD
EMDALKQQMEEKFMMANPSKISYEPITTTLRRKQEDVSAIVIQRAYRRHLLRRQLKQASL
LYRQINMPDAAKEGDSSPENEGLIVSMIMENYGTEVEVTETLSATSSPPSYDSVTRATSE
LFHALIPDAANTDLSEPFTDRDRETFL
NT seq
5844 nt
NT seq
+upstream
nt +downstream
nt
atggcagccatactgtttccaccgggtcctgacagtctacaccggttcactcgtgagtcc
ctggctggaatcgagcggcggatcgccgaggaggaggcccgcaatgccaaggagtaccag
gaggacctgggcgacgtggagacgcccaagtcccgggccgacctggaggccggaaagcag
ctcccgcgtatctttggagacattccgcctggactggtgggcgtccctctggaggacatc
gatccgttttacttccagaacaagagaacttttatagtactgaacaaagggaaggccatc
ttccggtttagtgccacgtctgcactctatatttttagcccttttcatcccgttagaaga
gcatcaataaagattttagtacactctttattcagtcttttcattatgtgcactattttg
accaactgctgcttcatggccatgtctgaaccagcgcagtgggccaaatacgttgagtac
acgttcactggcatttacacgtttgagtcgttgataaagatcctggcgcggggtttctgc
atcggccccttcaccttcctgagggacccgtggaactggctggacttcagcgtgattgtt
atggcatatgttactgagtttgtggacctgggcaatgtctcagcgttacggacattcagg
gttctacgagcactgaaaactatctcagtcatcccaggcctgaaaaccatcgtcggcgcc
ttgatccaatcggtgaagaagctggcggacgtgatgatcctgacggttttctgtctcagc
gtgttcgccctcatcggcctgcagctcttcatggggaacctgcggcagaaatgcgtccgc
agcaccgcgcactgtctcaacaccaccttaccttcatacaacaacagcactttcttctgc
aataacagaacctggtcctcgctggagaatttcatcactaatgaagataattacttcaaa
gtggaaggagccaaggacgccttaatatgtgggaacgcaagtgacgctggcaaatgtcca
gatggttttgaatgtatgaagaccggacgaaacccaaactacggctacaccagcttcgac
accttcggatgggcttttctctcgcttttcagactcatgacgcaagattactgggaaaac
ctctatcatcacacgctgcgctcggcgggtaaagcgtacatggtgtttttcgtggtggtg
atcttcctgggctccttttacctggtgaacctgatcctggctgtggtggcaatggcgtac
gaggagcagaaccaggccaccatcgccgaagcgctgcagaaagaacaggagtttcagctc
gccatggaacagctcaagaaggaacagcaggcggctcagaaagcacaagaaaccgagtcc
atcttgacggccgacgtgtcgccgttctcctcacaagacaaaggcaatctggaccggagg
aaaagctcgaggccgctgtcagaaggaacggaggacggcagcaacgacaaatcagccaag
atagacactatagaggggatgaagcaaacgcactctttgctggtccgcactctctcctta
cgggccagacgggagagtcaggtcagcatcttcaacttccggccaccgaacaaagactcg
gaggtggatttcgccgacgacgagtttagcaatcacggcgattcggacagtcgcggcggc
tcgctggctctgccctggagcaggagacgcaccagcgctcaaagcacctgcagtcacagc
tcgcagttcttcttcccgagtctcaacatcaacgggaaactcttcgtggccattgaccag
aacggcatctcgggccaggggccgctgtctcctctgccgctgcccacctgcaccatggag
aaggtcaaagaggaaagcggacacaactccaccaatgagctgagcagtatgctgctgccc
cagctgccccaggagggccgagaccgggccctgagcgccaccagctacatcactgacgcc
atggaagagctggaggaggcgcagcagaagtgtcacccgtgctggtacgcatttgcacac
aagtacctggtgtggatgtgttgccccggctggctgaagttgaaggaatgggtgaagttc
atggtgaatgatccgttcctggatctggccatcactatctgcatcgttctcaacacgctc
ttcatggctctggagcactatcccatgacagacgagttcaaccgtatgctgtctgtggga
aacctggtgttcacaggcatcttcacagctgagatggttctgaagatcatcgctctggat
ccgtattattactttcagcagggctggaacatctttgacagtctgatcgtcagtctgagt
ctcatggagctgggtttgtccaacgtggagggtctgtccgtcctgcgctccttcagactg
ctgagagtcttcaagctggcaaagtcgtggccgactctgaacacgctcataaagatcatc
gggaactctgtgggcgctctggggaacctgacgctggttctggccatcatcgtcttcatc
ttcgccgtggtcggcatgcagctgttcgggaagaactacgagtcctgcgtctgcaagatc
tccaaggactgcacgctgccccgctggcacatgaaggacttcttccactcgttcctcatc
gttttccgggtcttgtgcggagagtggatcgagaccatgtgggactgtatggaagtggcc
ggacagccgctctgcatcctggtcttcatgctggtcatggtcatcgggaacctcgtggtc
ttgaacctgttcttggcgttgctcctcagctccttcagcgccgacaacctctcggctccg
gacgaggacggcgaaatgaacaacctgcagatcgccatcgctcgcatccagcgcggcatg
ctgtggctccggcaggcgctctgcgacttcttcaacgggaacttcaaacggcgccggcag
aaggccaaggaggccaaagccatgctgaagctgaagagactgagccagcaggcgcactgg
gccgagggaaacgggacggccggcgtcatcgagcgcagcggggaggacgacagctacatg
accaaccccaacctcaccatcagcgtccccatcgcgcccggagagtccgacgtggagttt
cccgaggaagaggaggaggacgaggacgatgccagcgagagctccgaggaggaagaggag
caagaggaaaccaaaccgagagacgacaccagcctatcagagggcagcacaattgatctc
aggaaacctggcgaggaagaggacgaatactctgagatggccgaagaggccatggatccg
gaaaactgctttcctgacgtttgtgtacgtcgctttcagtgctgtgaaatcaacacgtcc
gagggtctgggtcgagcttggtggcgtctgaggaagacgtgttatcagatagtggagcac
agctggtttgagaccttcatcatcttcatgatcctcctcagcagtggagcgctggcattt
gaagacatttacattgaacaaaggaaagtggtcaaagtggtgcttgaatatgcagacaag
atcttcacctacatcttcatcttggaaatgactctgaagtggatcgcctacggtttcagg
aaatacttcaccaactactggtgctggctggactttctcattgtggacgtgtctctcgta
agcctggtagcaaacacgctgggctactcggactttgctgccatcaaatctctcagaacg
ctcagagccctcagaccgctgagagcgctgtcccggtttgaaggcatgagggtggtggtg
aacgcgctgatcggcgccatcccgtccatcatgaacgtgctgctggtgtgtctgatcttc
tggctgatcttcagcatcatgggcgtcaacctgttcgccggcaagttcggccgctgcgtc
aaccgcaccggcttcatctacaacgcgtcctacatcaacaacatgaccgagtgcatggag
atgaacagcacgcagtactactggaccaaagtcaaggtcaacttcgacaacgtgggcgcc
gggtacctcgcgctgctgcaagtggccacgttcaagggttggatggagatcatgtacgcc
gcggtcgactcacgatccgtggaagagcagcccattaaagagaacagcctgtacatgtac
ctgtacttcgtcatcttcatcatcttcggctccttcttcacgctcaacctcttcatcggt
gtcatcattgacaatttcaaccaacagaaacgaaagttaggaggacaggacatctttatg
acagaagaacagaagaaatattacaacgccatgaagaaactaggatccaaaaaacctcag
aaacccattccaagacctcctaacccgatccaaggattcttcttcgatttggtgtctaaa
caagcgttcgacatcatgataatgctgctgatcatcctcaacatggtgacgatgatggtg
gagacggacgaacagtctcccagcatcgagtacatcctctactacatcaacctggccttc
atcgtcatcttcaccaccgagtgcatcatcaaactcatcgccctgcgctgctacttcttc
accatcagctggaacatctttgactttgtggttgtcatcctctccattgtgggcatcgtt
cttgccgacatcattgagaagtacttcgtctcgccaacgctcttccgtgtcatccggctg
gctcgaatcggacggatcctccggctcatccgcggcgcaaagggaatccggacgttgctg
ttcgcgttaatgatgtcgctcccggcgctcttcaacatcggcctgctgctgttcctcgtc
atgttcatctacgccatcttcggcatggccaacttcgcctacgtcaagaagcaaggcggc
atcgacgacatgttcaacttcgagacgtttggcaacagcatgatctgcctcttccagatc
acaacgtcggccggatgggacaacttgctcagtccgatcctcaacaactcgccggaggaa
tgcgacccggacgtcccgcacaccggaacgaacgttcgaggaaactgcgggaatccttcg
gtgggaatcacgtttttcgtgacgtacattattatatcgtttctcatcgtggtgaacatg
tacatcgcgattatactggaaaacttcagcgtggctactgaggagagcacggagccgctc
agcgaggacgactttgagatgttttacgaagtctgggagaagttcgatccggaggcgacg
cagtttatcgagtattcgaaactctcggattttgccgactcgctctcggagccgctgcgc
atcggaaagcccaataaaatcaaactgatttccatggacctgccaatggtgagtggtgac
aagatccactgtttggacatcctcttcgcgttcaccaaacgcgtcctcggagagtcggac
gaaatggacgcgctgaagcagcaaatggaggagaagttcatgatggcgaacccgtccaag
atctcctatgagccgatcacgacgacgctacgtcggaagcaagaggacgtttccgccatt
gtgatccaacgcgcgtataggaggcatctattgcgacggcagctgaaacaagcatcgcta
ctttaccgtcaaattaacatgccggacgccgccaaagaaggcgacagctcgccggagaac
gaaggacttatcgtttcaatgatcatggagaactacggcaccgaagttgaggttacagaa
actttatcggctacttcgtctccgccgtcgtacgacagcgtcacaagagcgactagtgag
cttttccacgctctaatcccagacgccgcgaacacggacctcagcgaacctttcacagat
cgagatcgcgagacgtttctgtga
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integrated database retrieval system
