Labeo rohita (rohu): 127156560
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Entry
127156560 CDS
T09007
Symbol
amfra
Name
(RefSeq) LOW QUALITY PROTEIN: autocrine motility factor receptor a
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04137
Mitophagy - animal
lroh04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127156560 (amfra)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127156560 (amfra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127156560 (amfra)
Enzymes [BR:
lroh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
127156560 (amfra)
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127156560 (amfra)
Multi subunit type E3
ERAD complex
127156560 (amfra)
LMBR1L-GP78-UBAC2 complex
127156560 (amfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
G2BR
zf-RING_2
CUE
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_11
zf-rbx1
zf-ANAPC11
zf-RING_5
zf-RING_16
Prok-RING_4
zf-C3HC4_4
RING_XB3-XBAT31
zf-RING_Vps41
zf_RING_Vps8
Baculo_p26
zf_RING_Vps8_fungal
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
127156560
NCBI-ProteinID:
XP_050955457
LinkDB
All DBs
Position
25:complement(1375107..1390919)
Genome browser
AA seq
626 aa
AA seq
DB search
MPLLFLERFPWPSLQTYTALSTVLLAGTILSAYTTVRDSKYSSALTEDAHSTSDEEIKLD
QLDNFGNVATNVLLYLITDSLFVWVMVNTACCILMLIAKVIQCIVFGPLRVSEKQHLKDK
FWNFIFYKFIFIFGVLNVQRVEEVVLWCLWFSILIFLHLMVQLCKDRFEYLSFSPTTPMS
SHVRVLALLVSVLTCCGGLXVLCALVGHLHGMHTVAFMAAECLLVTVRTGHVIIRYSIHL
WDLNHEGTWENKSSYIYYTDFIMELAILCLDLMHHIHMLLFGNIWLSMASLVIFMQLRYL
FHEVQRRIRRHKNYLRVIDNMESRFAVATPDELLANNDDCAICWDSMTTARKLPCGHLFH
NSCLRSWLEQDTSCPTCRMSLNINEGGREREEGQREPLDDNIAAGPGTEARPHLNQHNHF
FHFDGSRIASWLPSFSVEVMHTTNILGIAQANNSQLNAMAHQIQEMFPQVPYHLILQDLQ
LTRSVEVTTDNILEGRIQVPFPTQPVERTPIQLNTASEESAGASSSSEVAAPEAEDFEVR
GSRFSKSADERQRMLMQRKEELLQRARRRYLHKKPDEGDMFSAAAIDNDDAMPSTEDEDS
DSVTLRRRRLAAAAERRMQRQEPPPF
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgctgtttctggagcgcttcccctggcccagtttacagacatacaccgccctg
agcacagttctgctggccgggaccatattaagtgcctacaccacagtcagagactcaaag
tactcatctgcactgacagaagacgcgcacagcacgtctgatgaggaaatcaagctggat
cagctggacaactttgggaatgtagccactaatgtgctgctgtatctcatcaccgacagt
ctcttcgtctgggtgatggtgaacacggcatgctgcatcctcatgttaatcgctaaagtg
atccagtgcattgtgtttggaccgctgagagtcagcgagaagcagcatctgaaagacaag
ttctggaacttcatcttctacaagttcatcttcatctttggcgtgttgaatgtgcagcgg
gtggaggaggtggtgctgtggtgtttgtggttctccattctcatcttccttcatctgatg
gtgcagctctgcaaagaccgctttgaatatctctcgttttctcccactactccgatgagc
agtcatgtgcgagtgttggctctgctggtgtctgttttgacgtgctgtggaggtctangc
gtgctctgcgccctcgtcgggcaccttcacggcatgcacactgtcgctttcatggcagct
gagtgtttgctggtgactgtacgcacaggacatgtcatcataaggtattccattcacctg
tgggatctgaaccatgagggtacctgggagaacaagagctcatatatctactacacagac
ttcatcatggagttagccatcctctgcctagacctgatgcatcacatccatatgctgctc
ttcgggaacatctggttgtccatggctagtcttgtgatctttatgcagctgcgctatctc
tttcacgaggtgcagagaagaattcgccgccataaaaactacttgcgtgttattgacaat
atggaatccaggtttgctgtggcaacgcctgacgagctgttggctaataacgatgactgt
gccatctgctgggattcaatgacaacagcacgcaagctgccctgtggccatcttttccat
aattcctgtctgcgctcttggctggagcaggacacttcctgtcccacgtgccgtatgtca
ctaaacattaatgaaggtggtagagagagagaagagggccagagagagccgctggatgac
aacatagctgctgggccaggaacagaggcccgacctcacctcaaccagcataaccacttc
ttccactttgatggatcccgcattgccagttggctgccaagtttctctgtggaggtcatg
cacaccaccaacatccttggtatcgcacaggccaacaactcgcagctcaatgccatggcc
catcagatccaggaaatgtttccgcaggttccttaccatctgatcctgcaggatttgcag
ctcacacgctccgtagaggtcaccaccgataacatcctggagggcaggatacaggtgcct
ttcccaacacagcctgtggagcgcacacccatacagttaaataccgcttcggaagagtca
gcgggtgccagcagcagttcagaggtcgctgcccctgaggcagaagactttgaggtgcgg
ggaagccgcttttccaagtccgcagatgagagacagagaatgctaatgcagaggaaggag
gagctgctccaaagagctcgcagacgttatctacacaagaaacctgatgaaggagacatg
ttttctgctgctgctatcgataatgatgatgccatgccctccacagaggatgaagactca
gattcagtgaccttgaggcgcagaagactggcggccgctgccgagagacgcatgcagagg
caggagcctcccccattttga
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