Labeo rohita (rohu): 127156718
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Entry
127156718 CDS
T09007
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127156718
Enzymes [BR:
lroh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127156718
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
127156718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
127156718
NCBI-ProteinID:
XP_050955699
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All DBs
Position
25:29392886..29472991
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AA seq
681 aa
AA seq
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MGCNLCSLQKREEHYKLLYEISQVNGRDLSRASHEEAVEVLRSAKDPIVVQVLRRTPLPR
GQGSSQDVQLVDVCTQTEITFEHIMALAKLRPVTPPVPDICPFLLSDSCHSLHTMDQEYF
EGSEYLSNMAADAERTDDFEYEEVELRRMSSQEKLGLTLCYRTDDEEDVAIYVSEIEPNS
IAARDGRIREGDRILQINGQDVQDRQEAVAVLSNEECRNIVLLLARPEMQEEPWLDDEHS
EFLEELKMEMLEEQRREEEEEDMKRAAREEDEKARATHDETITASCSYNHEKIIDPTTGS
EKNVLAQIQKKLSRCLRQSSPSGRSSADGAEKDERYRQLLELKCQIRNSGEYDLFYARSS
TIECSLTEPSGGVERELRMLNEELRSIELECQNIMKAHQLGSRKLADISEHPEKSDKDSS
SAYNTAESSRSTPLAMDRSPERRRVSLTNQKNLLALRRAPSGSPDHSNPSESEQTPPEGS
HSRIPTWCQRAVDVPVHARQYQSYVQLIQQQSAVEFALGGPQVTRPSEPKMEWKVKVRSD
GTRYITKRPVRDRLLRERALKIKEERSGGMTTDDDAMSEMKMGRYWSKEERKQHLLRAKE
QRRRREFMQRSRLESLRENPLSSGEGRKEASIIELSHRKMMKKRNKKILDNWMTIQELMT
HGEKAPEGSKVHNAFLSVTTV
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgtagtttacagaagagagaggagcattacaaactactgtacgag
atctcacaggtgaacgggagggatctgtccagagccagtcatgaggaggcggtggaagtt
ttgcgcagcgctaaagaccccatcgtggtgcaggtgctccggcggacgcctctgccccgg
ggtcaaggctcgtcgcaggacgtccagctggtggacgtgtgcacgcagacggagatcacc
ttcgagcacatcatggctttggccaaactccgtcccgtcacgccgcccgtgccggatatc
tgccccttcctcctgtcggacagctgtcactctctgcacacgatggatcaggaatacttc
gagggcagcgagtatctgtccaacatggcggcggacgcggagaggaccgatgactttgag
tacgaggaagttgaactgcgtcgcatgagcagtcaggagaagctcggcctcacgctgtgc
tacaggacggacgacgaggaggacgtcgccatctacgtcagcgagatcgagccgaacagc
atcgccgcacgagacggtcgaatccgagaaggcgatcgtattttacagataaatgggcag
gacgttcaggacagacaggaagcggtggccgttctctcgaatgaagaatgcaggaatatc
gtgctgctgctcgcaaggccggaaatgcaggaggagccgtggctggatgacgaacacagc
gaattcttggaggagctgaagatggaaatgctggaggagcagaggagagaagaggaggag
gaggatatgaagagagcggctcgagaggaagacgagaaggccagagcaactcatgacgaa
accatcacggcgtcctgctcctacaaccacgagaagatcatcgatccgacgaccggctcg
gagaagaacgtcctcgcgcagatccagaagaagctatcgcggtgtctgcggcagagctca
ccttcgggccggagctcagcggatggagcggagaaggacgagcgctatcggcagctcctg
gagctgaagtgccagatccgcaacagcggcgagtatgacctgttctacgcgcgcagcagc
accatcgaatgcagcctgacggagccgagtggcggcgtggagcgcgagctacgtatgctc
aacgaggagctgcgcagcatcgagctggagtgccagaacatcatgaaggctcatcagctt
ggatcccgcaagctggcggacatcagcgagcatcccgagaagtcggacaaggacagttcg
agcgcatacaacacagccgagagctcacgcagcacgccgctagccatggaccgctctccg
gagcgccgcagggtcagcctgaccaaccagaagaacctgctggcactccgacgggcaccg
agcggcagtcccgaccacagcaacccgtccgagtccgagcagacgcctcccgaaggctcc
cactcacggattcccacttggtgccagcgggcagttgacgttccggtgcatgcgcgacag
taccagagctacgtgcagctgatccagcagcagtcggcagtagagttcgctctgggcggt
ccgcaggtcactcggccttctgaacccaagatggagtggaaggtgaaggtccggagcgac
ggaaccaggtacatcaccaaacgtcccgtccgtgaccgtctcctgcgggagcgagcgctc
aagatcaaggaggagcgcagcggcggcatgacgaccgatgacgacgccatgagcgagatg
aagatgggacgctactggagcaaggaggagcgcaagcagcacctcctgcgggccaaagag
cagcggcggcggcgggagttcatgcagcggagccgcttggagagcctgcgggagaatccg
ctcagcagcggagagggacgcaaggaggcgagcatcatcgaactcagccaccgcaagatg
atgaagaagcggaacaagaagattctggacaactggatgaccattcaggagctgatgacg
cacggagagaaagcgcctgagggatccaaagttcacaacgccttcctgtcggtcactact
gtatag
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