Labeo rohita (rohu): 127156826
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Entry
127156826 CDS
T09007
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B isoform X1
KO
K06636
structural maintenance of chromosome 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04110
Cell cycle
lroh04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
127156826 (smc1b)
04114 Oocyte meiosis
127156826 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127156826 (smc1b)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
127156826 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
127156826 (smc1b)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_29
SbcC_Walker_B
7tm_7
Motif
Other DBs
NCBI-GeneID:
127156826
NCBI-ProteinID:
XP_050955868
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All DBs
Position
25:15706621..15725005
Genome browser
AA seq
1234 aa
AA seq
DB search
MGFLKQLDVENFKSWRGKQTIGPFKRFNCIIGPNGSGKSNVMDALGFVMGERAVNLRVKH
TRDLIHGAHIGKPMSTFASVSMIYCGDNNEEIVFSRRISGDSSEYRVNGTPVTLAKYTGQ
LEKIGIVVKAKNCLVYQGAVETIAMMNSKERTKMFERISSSGELSAEYDAKLAALQKAKE
DTQFHFNRKKAATAEKKQVFKDKTEAEKYQALVDEHSESKLQLTLFQLFHNEKKIDTQSD
SLREMQDAAAQQKNSLDDWEQTMKAQKKEHGRLNREHQQLEKEIRSQEQILNQQRPQYIK
AKVNTSHHEQKVEEAHRSLQKNRSQQARKEQELDELRSELVELERAWKASERQMEEEAAQ
RGAGVQLEESQMERYKELKELARKKGAVLNQTAEKLHWEVKADREKLQFDLRRKSEIQAN
IKHSQTRLEDFSRRAEKLEEFANTTRNALEEQRQQEELLAEELSRGFVRMEQVNMELTQV
LTELQNARLDSQENRRQQRRDEVLESLRRLYPDGVYGRLVDLCQPIHRKYQVAVTKVFGK
NMNAIVVTSAKVAHDCIRFLKEERAEPETFLPIDYIDVRPLNERLREVQGAKMVVDVVQC
AQNAPQLKRVIQYVCGNSLVCETIKDARRIAFDGPERLQTVALDGTLFRKSGVISGGTSD
LRSKARRWEEKDMNKLKEEKDKLSSELRALMKLKRKEEDLKQIRAQSQGNQTRLKYSNSE
LESIRKKSIPACQTEISKLRSELSNLEAQIEIQTESVELKDNEMKAVRDQINQIDDLVFA
DFCAEIGVANIREYEQDYLRMQQEIEKKRLQFESQHTRLSTQMEYEQAQLEKLVKQMKKI
EETMEKEENVVISLKEVEDRLMIAVEQTQSNLIELNNQLSKKANLVKDAKTELDKTLKGF
QERSRVLVKLQKEMICREAALEHLRLSKHNLLLACKINGLPLTLISGALDDICDIQLDPE
SQSVTTRGIFEREAQMVFDYSTLDSGLKDLTEDSEVEAELEKLKEGVSSLESMIMMSRAP
NLKALEKIREVKDSFREVMDAFETSTHATKKCSQEFEQVKAKRFHLFSKCFEHVSVVIDQ
IYKKLCRNASAQAILTAENPDEPYLDGINYNCVAPGKRFMAMDNLSGGEKVIAALALVFA
IHSFRPAPFIVLDEVDAALDNTNIGKVTGFFQMMSRESCQIIVISLKEEFYSRADALLGV
YSMFDECMFSSLLTLDLTPYPLNDENATDREKDK
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcttaaaacagttagacgtcgaaaatttcaagtcctggcgaggaaaacagacc
atcggtccatttaaaaggtttaattgcataattggccctaatggatcaggcaaatctaat
gtcatggatgctcttggatttgttatgggagagagagctgtaaatcttcgtgtcaaacac
accagagatctcatacatggtgcccacattggcaaacccatgtccaccttcgccagcgtg
agcatgatctactgtggagacaataatgaagaaattgtcttcagcaggcgcatttcaggg
gattcgtctgagtatcgtgtgaatggtacaccggtcacattagcgaagtacactggacag
ctggagaagattggcattgtggtgaaagcaaagaattgtctggtgtatcagggtgctgtg
gagaccattgccatgatgaattccaaagagcgaacaaagatgtttgaacgaatcagcagc
tctggagagctgagcgcagagtacgacgccaagctggcggccctgcagaaagccaaagag
gacacccagttccactttaacaggaagaaagcagctacagctgagaagaaacaagtcttt
aaagataagactgaggccgaaaaatatcaggcgctagtggatgaacacagtgaaagcaaa
ctccagctgactctctttcaactcttccacaatgagaaaaagatagacacacagtcagac
tcgctgagggaaatgcaggatgctgcagcgcagcagaagaacagcctcgacgactgggaa
caaactatgaaggctcagaagaaagaacatgggcggctgaacagagaacatcagcagctg
gagaaggagatcagatctcaagagcagattctcaatcagcagaggcctcagtacatcaaa
gctaaagtgaacacctcccaccacgaacaaaaagtggaggaggcacaccgttctctgcag
aagaaccgaagtcaacaggccaggaaggagcaggagctagatgagctaaggagcgagctg
gttgaactggagagggcttggaaggcttctgagagacagatggaggaggaagcggctcaa
agaggagctggagtgcagctagaggagagccagatggagcggtataaggaactcaaagag
ctggccagaaaaaagggagccgttttaaaccaaactgcagagaagctacactgggaggta
aaagcagaccgtgagaagctccagtttgacctgaggaggaaaagcgagatacaggcaaat
attaaacacagtcaaactcggctggaagatttcagcagaagggcagagaagctggaggaa
tttgccaacactactaggaacgctcttgaggagcagcgtcaacaggaagagctgctggca
gaggagctgtcgagaggctttgtgcgaatggagcaggtgaacatggagctcacccaggtg
ctgaccgagctgcagaacgctcgtcttgacagccaagagaaccgacgtcagcagagacga
gatgaggtcctggaaagcctcaggagactctatcctgatggagtgtatggccgtctagtg
gatttgtgccagcccattcacaggaaataccaggtcgctgtcaccaaggtgtttggcaaa
aacatgaacgctattgttgtgacatctgcgaaagtggctcatgactgcatccgatttctg
aaagaagaaagagctgaaccagagacattcctgcctattgactatatagatgtgcggcct
ctgaatgagcgtctaagggaagtgcaaggagccaagatggtagtagatgtggttcagtgc
gctcaaaatgcccctcagcttaagagggtgatccagtatgtgtgcgggaactctttagtt
tgcgaaactataaaagatgctcgtcggattgccttcgatggccctgagcgccttcagacg
gtggctcttgacggcaccttgtttcgcaagtctggggtgatttcaggaggcacgtcagac
ctgcgcagtaaagctcgacgctgggaggagaaggatatgaacaaactgaaagaggagaaa
gataagttgtcgtccgagttgcgtgctttgatgaagctgaagcgcaaagaggaggattta
aagcagattagggctcagtctcagggaaaccagactcgcctcaaatactccaactcagaa
ttggaatccatacgcaagaagagcatcccagcttgtcagactgagatttccaaactcagg
agtgagctttccaacctcgaggcccagattgagatacagactgagagtgtagaactaaag
gataatgagatgaaggccgtcagagaccaaattaatcagattgacgatttggtgtttgcg
gacttctgcgcagagattggtgtggctaacatccgtgagtacgagcaggattatctccga
atgcagcaggagattgagaagaagcgcctgcagtttgagtcccagcatacccgtctaagt
acccagatggagtatgaacaggctcagttggagaaacttgtcaaacagatgaagaagata
gaagagaccatggaaaaagaggagaacgttgttatcagcttgaaagaggtggaagataga
cttatgatagctgtggagcagacgcaatctaatctcatcgaactgaataaccagctgtca
aaaaaggcaaatttagttaaagatgccaaaacagagctggacaagactcttaaaggcttc
caggagagatccagggtgctggtgaagcttcagaaggaaatgatctgcagagaggcggct
ctagagcacctgagactgagcaaacacaacctgctgctggcctgtaagatcaacggctta
ccgttgactctgatctctggagcattagatgacatctgtgacatacagctggacccagag
tctcagagcgtcacaactcggggcatttttgaacgagaggcgcaaatggtgtttgattat
tcaacactggacagtggccttaaggacctcaccgaagacagtgaagtggaagctgagttg
gagaagctcaaagagggggtctcctctctggagtccatgataatgatgtcaagagctccc
aacctgaaagctctagaaaagatcagagaggtgaaggacagcttccgggaagtcatggat
gcatttgagaccagcacacacgccactaagaaatgcagtcaggagtttgagcaagtgaag
gccaaacgcttccatctcttcagcaagtgctttgaacacgtgtctgtcgtcatcgaccag
atttacaagaaactctgtaggaacgccagcgctcaggccattctcactgctgagaatcca
gatgagccctacctggacggcatcaactataactgtgtggctcctgggaaacgattcatg
gcaatggacaacctgtcaggaggagagaaggtcatcgccgctctcgctttggtctttgcc
attcacagctttcgtcctgctcctttcattgtgctggatgaggtggatgctgccctggac
aacacaaatattggcaaggttacaggatttttccagatgatgtccagagagagctgccag
atcattgtgatctcgctgaaggaggagttctactcccgggcagacgcacttcttggagtc
tattcaatgtttgacgaatgcatgtttagcagtctgctcaccctggacctcaccccatac
ccactcaacgacgagaacgccacagacagagagaaggacaaatga
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