Labeo rohita (rohu): 127157038
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Entry
127157038 CDS
T09007
Symbol
si:dkey-219c3.2
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127157038 (si:dkey-219c3.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127157038 (si:dkey-219c3.2)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127157038 (si:dkey-219c3.2)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
127157038 (si:dkey-219c3.2)
Coactivators
SAGA/TFTC/STAGA complex
127157038 (si:dkey-219c3.2)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
127157038 (si:dkey-219c3.2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
127157038
NCBI-ProteinID:
XP_050956212
LinkDB
All DBs
Position
25:complement(13034853..13093666)
Genome browser
AA seq
975 aa
AA seq
DB search
MMSLRFPQCLSSKTTQAPCAFLKRLSKMAGVPDPLEDMLYSEVDEKAVSDLVGSLESQLG
GQNKAVGPQGDIRRPANALNPHLGKLLPAQVGTTLEQQQRRQQPERNQEGNSQENGPDRI
PASSAVPSTSNLPSTSANLVTAANRVQYHSSKPSTCSSDAAPTDSHPNTNHIASAVRTVP
ARIQTVNGSSGTLNSSVIASAPASVNGIDIGSGVGNGKSNMSAPTSTNTAFVSAQPNSTL
PHANVSLDSQANPTIALHRPPNTITSVVHNGGDPKVSGLPVQGAGLVPTSVAFTNTEPKS
DPQNQIKAIVPNQLPGAPVGLHPSTPTQIIVSSSPVVTSLPVASTPSALAKPATTALVGQ
PTTLLRPGTPIQATATATPQQRPGAPTTQLIVRPQQQTTIQLPPGFTIPPGMVLVRTEAG
QLALVPQQVLAQAKAQNQNKGTLSPRPATPTAGTAFRVTTPVAQQKTAVVTITSAQKPTT
TVITAGARVQPAPQTVLKPSVTPQSPITTSAAAPANRAPVLSQEMQENVKKCKNFLATLI
KLASHNSPSPETSRNVKALVQDLLDAKIEPEEFTNRLQTELKSSPQPYLIPFLKKSLPAL
RLTLLNSQQSLTQLSQTPTTSTPLTVNTIKAPAPSTLPTTVSTIRPATPLAPTTTMAVKR
PGVQATPTRMPVVITQTVRAQGAVGTPLQVRSPMGVAVQALANQKQKLNDPGGGTFRDDD
DINDVASMAGVNLNEENARILATGSELVGTQIRSCKDEAFLPASLLHKRLLETAKKFGVT
EVSMETVNLISHATQSRLRSMLEKVSAVAQHRADSCKDEELYEQASDVRTQLKFFEQLEK
IEKQRKDDEERELLMKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAI
GPRKKRKLDSPGASAGAEFPAGSSGSATGSTSSSASSVRQTRQRITRVNLRDLIFCLEQE
RTTARSMLLYKALLK
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcattacgtttcccacaatgcctcagcagcaaaacaacgcaggcgccgtgcgca
tttctcaagcgtctctcaaagatggcgggtgtccccgatccgctggaagatatgctctac
tccgaagtggacgaaaaagccgtcagtgacctcgtaggctcgttagaatcgcagttgggt
ggacaaaacaaggcggtcggtcctcaaggcgacatcaggagacccgcaaacgcgctaaat
ccacacttggggaaattgctgcccgcccaagtaggaacaacactggagcagcagcagcgg
cggcagcagccagagcgaaaccaggagggaaactctcaagaaaacggtccggacaggata
ccggcgtccagcgccgtcccgtccacctcgaacctgcctagtacctctgcaaatttggtt
acagccgcgaaccgggtgcaatatcattcatcaaaaccatcaacttgttcaagtgacgca
gcaccaacagactctcaccccaatacaaatcacattgcgtctgctgtccggacggttccc
gccagaatacagactgtgaacggaagcagtggcacgttaaactcttctgttatcgcttct
gctcctgcttctgtgaacggtattgacattggttcaggtgtaggtaatggtaaaagcaac
atgtctgctcctactagtacaaatactgcttttgtgtccgctcagcccaacagcacactg
ccacatgcgaatgtgtcactagatagtcaagcaaaccccaccattgcactgcacaggcct
cctaacaccatcacaagtgtcgtacacaacggaggtgaccccaaagtctcaggattgccc
gtgcagggcgccggtcttgtgcccacctccgtggcgttcacaaacacagagcccaagtct
gaccctcaaaaccagattaaagccatcgtcccgaaccagctccccggggcgcccgttggg
ttgcaccccagcacgcccactcagattatagtgtcgtccagtccagtggtgacctcactt
cctgtggcaagcacgccctctgcccttgcaaagccagcaacgactgctctcgtaggacag
cctacgaccctgttgagacccggtacgcccattcaggccacggcgaccgcgacgccacag
cagcgtccgggggctcctacgacccagctgatcgtcagaccgcagcaacaaaccaccatt
cagttgccgccgggattcaccatacctccaggtatggtgctggtacgcacggaggccggt
cagcttgcgttggttcctcagcaggtcctggcccaggccaaagctcagaaccaaaataaa
ggcaccctgtcaccaagacctgctacacccactgctggaacggctttcagagtcaccaca
cctgttgcccagcaaaagacagcagtggtaacgattacctcagctcagaagcccaccaca
acagtcattacagcaggtgcccgtgtgcagcctgcaccacagacagtcctaaaaccctcg
gtgacccctcagagtcccatcaccacctctgctgctgccccagctaacagagcccctgtc
ctctctcaggaaatgcaagagaatgtaaagaagtgtaagaacttcctagcaacgctcatc
aaactggcatcccacaattctccctcgccggaaacatctcggaatgtgaaggcactagtg
caggatctgctggacgcaaaaattgagcctgaggagtttacgaatcgcctgcagacggag
ttgaaatcatctcctcaaccatacctgatcccctttttgaagaaaagcctgcctgctctg
cgtctgactcttctgaactcccagcagtctttaactcagctgtctcagacccccactacg
tccaccccactgacggtgaacaccattaaagctccagcgccgagcacactgcccaccacc
gtatctaccatccgaccggctactcccctggctcccactaccaccatggctgttaagagg
cctggggttcaggctactccgacacggatgccggtggtgattacacagacggttcgtgct
caaggtgctgttgggactcccttgcaagtgagaagccccatgggtgtggccgttcaagct
ttggccaatcagaaacagaagctgaatgaccccgggggtgggactttcagggatgatgac
gacatcaatgacgtggcgtccatggctggtgtgaacttaaatgaggagaacgcccgtatc
ttggccacgggttcggagctggtgggcacccagatccgttcctgtaaggacgaggccttc
cttcctgccagcttgctccacaaacgtctcctggagaccgccaagaagttcggcgtgacg
gaggtgtcaatggagacggtcaatctcatttctcacgccactcagtccaggctgcgctcc
atgctggagaaagtctcggccgttgcgcaacaccgcgccgactcctgcaaagatgaggag
ctgtacgagcaggcgtcggatgtgcggacccagctgaagttctttgagcagctggagaag
attgagaagcagaggaaagatgacgaagaacgggagctgctaatgaaagccgcaaaaagt
cgctcgaggcaggaggatcccgaacaggcccggcttaagcagaaagctaaagagatgcag
cagcaggaacttgcccagatgagacagcgtgatgccaacctcacagcccttgccgccatc
ggaccccgcaagaaacgcaagcttgactctcctggagcctcagcaggtgcagagtttccc
gcgggctcctccggatcagcgaccggttctacctcatcctcagcatcctcagtccggcag
acccgtcagcgcatcacccgggtcaacctcagggacttgatcttctgcttggagcaggag
cgaaccacagccaggtccatgctgctctacaaggcccttctgaagtag
DBGET
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