Labeo rohita (rohu): 127161719
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Entry
127161719 CDS
T09007
Symbol
col1a1a
Name
(RefSeq) collagen, type I, alpha 1a isoform X1
KO
K06236
collagen type I alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127161719 (col1a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127161719 (col1a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127161719 (col1a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127161719 (col1a1a)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127161719 (col1a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
127161719
NCBI-ProteinID:
XP_050960393
LinkDB
All DBs
Position
3:28322249..28338094
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AA seq
1448 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDRTGGSCTLDGQVYNDRDVWKPEPCQICVCDSGT
VMCDEVICEDTTDCPNPVIPHDECCPVCPDDELQDPAVEGPRGPAGEKGDRGLPGPPGND
GIPGQPGLPGPPGPPGPPGLGGNFSPQMSGGFDEKSGGALAVPGPMGPMGPRGPPGPPGS
PGPQGFTGPPGEPGEAGAPGAMGPRGPAGPPGKNGEDGESGKPGRPGERGPPGAQGARGF
PGTPGLPGIKGHRGFSGLDGAKGDTGPAGPKGEPGAPGENGTPGAMGPRGLPGERGRSGP
PGAAGARGNDGAAGAAGPPGPTGPAGPPGFPGGPGAKGEGGPQGARGAEGPQGARGEPGN
PGPAGAAGPAGNNGADGAPGAKGAPGASGIAGAPGFPGPRGPPGPSGAAGAPGPKGNTGE
VGAPGAKGEAGAKGESGPQGVQGPPGPPGEEGKRGPRGEPGAAGVRGPAGERGAPGARGF
PGADGSSGPKGAPGERGGPGVVGPKGATGEPGRNGEPGMPGSKGMTGSPGSPGPDGKTGP
SGAPGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEAGKPGERGVIGAIGATGAPGKDGD
VGAPGAPGPAGPAGERGEQGPAGPPGFQGLPGPQGATGEPGKSGEQGVPGEAGAPGPAGS
RGDRGFPGERGAPGPAGPAGARGSPGASGNDGAKGDAGAPGTPGAQGPPGLQGMPGERGA
AGLPGLKGDRGDQGAKGADGAAGKDGIRGMTGPIGPPGPAGAPGDKGETGAPGLVGPNGA
RGPPGERGETGPPGPAGFAGPPGADGLPGAKGEAGDNGAKGDAGAPGPAGATGAPGPQGP
VGATGPKGARGAAGPPGATGFPGAAGRVGPPGPAGNAGPPGPPGIAGKEGQKGNRGETGP
AGRTGEIGAAGPPGAPGEKGTPGAEGPPGPSGIPGPQGIAGQRGIVGLPGQRGERGFPGL
PGPSGEPGKQGPSGPSGERGPPGPMGPPGLAGPPGEPGREGTPGNEGSAGRDGAAGPKGD
RGETGASGTPGAPGPPGAPGPVGPAGKTGDRGESGPAGPAGAAGPAGPRGPSGPAGARGD
KGETGEAGERGMKGHRGFTGMQGPPGPPGSSGEPGPAGASGPAGPRGPAGSAGPAGKDGM
SGLPGPIGPPGPRGRSGEIGPAGPPGPPGPPGPPGPSGGGFDIGFIAQPQEKAPDPFRSY
RADDANVMRDRDLEVDTTLKSLSQQIESIISPDGTKKNPARTCRDLKMCHPDWKSGEYWI
DPDQGCNQDAIKVYCNMETGETCVYPAESSIPKKNWYTSKNIKEKKHVWFGEAMTDGFQF
EYGSEGSKPEDVNIQLTFLRLMSTEASQNITYHCKNSIAYMDQASGNLKKALLLQGSNEI
EIRAEGNSRFTYSVTEDGCTSHTGAWGKTVIDYKTTKTSRLPIIDIAPMDVGAPNQEFGI
EVGPVCFL
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttggcgctgttgctcagcgcaacggtgcttttggca
agaggacaaggcgaggatgatcgcacaggtggcagctgcacattggacggccaggtctac
aatgacagggacgtctggaaaccagagccatgccaaatctgcgtgtgcgacagcggcacc
gttatgtgcgacgaggttatctgcgaggacacgaccgactgccccaacccagtgattccc
cacgacgagtgctgccccgtctgcccagacgacgagctccaggaccccgctgttgaggga
ccaagaggtcctgccggcgagaagggtgacaggggtcttcctggccctcctggcaatgac
ggaatccctggacagcctggtcttcctggacccccaggcccccctggacctcctggcctt
ggtggaaacttttctcctcagatgtctggtggatttgatgagaaatctggaggagcattg
gccgtcccaggccccatgggacctatgggcccccgtggaccccctggacctcctggatct
cctggaccccaaggatttactggtccccctggtgagcctggtgaggctggtgctcctggt
gcaatgggtccccgtggtccagctggtccccctggaaagaacggagaggatggtgagtct
ggcaaacccggtcgccctggtgagcgcggacctcctggcgcacagggtgctcgtggattc
cccggaacccctggacttccaggcatcaagggacacagaggattcagcggtctagatgga
gctaagggagatactggccctgctggacctaagggtgagcctggtgcacctggcgagaac
ggaactcctggagctatgggtcctcgtggtctgcctggcgagagaggccgttctggtcct
cccggtgctgctggtgctcgtggtaacgatggtgccgctggtgctgctggtcctcctggc
ccaactggccctgctggtcccccaggattccctggtggccctggagctaagggagaaggt
ggtcctcagggagctcgtggtgctgagggaccccagggagcccgtggtgagcctggtaac
cctggacctgctggtgctgctggacccgctggtaacaacggagctgatggtgcccctggt
gccaagggtgctcctggcgcttctggtattgctggtgctcctggtttccccggaccccgt
ggtcctcctggaccttctggagctgctggtgcccctggccctaagggtaacactggtgag
gtcggtgcccctggtgccaaaggagaggctggtgctaagggagagtctggtccccaagga
gttcagggtccccctggcccccctggtgaggaaggcaagagaggacctcgtggtgagccc
ggtgctgccggtgtccgcggacctgctggcgaacgtggtgctcctggtgctcgtggtttc
cctggtgctgatggatcttcaggccctaagggtgcccctggtgagcgtggaggccctgga
gttgttggacctaagggtgccactggtgagcctggccgcaatggtgaacctggtatgcca
ggatccaagggtatgactggtagccctggcagccctggacctgatggaaagaccggacct
agtggtgctcctggacaagatggccgccctggaccacctggccccgttggagccagagga
cagcctggtgtcatgggattccctggacctaagggtgctgctggtgaggctggcaaaccc
ggtgagagaggtgtgataggtgctattggtgccactggcgctcccggtaaggatggtgat
gttggtgcccctggtgctcctggacctgctggacctgctggtgagagaggtgaacaggga
cctgctggtcctcctggattccagggtctcccaggacctcagggtgctactggtgagcct
ggcaagtctggtgagcagggtgttcctggagaggctggagctcctggacctgctggatcc
agaggtgacagaggattccctggtgagcgtggtgcccctggcccagctggccctgctggt
gcccgtgggtctcctggtgcatctggtaacgatggtgccaagggtgatgctggtgcccca
ggtacccctggcgctcagggtcctcccggacttcaaggaatgcccggcgagcgtggtgct
gctggtctgccaggtcttaagggtgacagaggtgaccaaggtgccaagggtgctgatggt
gccgctggtaaagatggcatccgtggtatgaccggaccaattggacctcctggacctgct
ggagctcctggtgacaagggagagactggcgctcctggacttgttggacctaatggtgcc
cgtggaccacctggtgagcgtggagagactggtcctcctggacctgctggatttgctgga
cctcctggtgctgatggtctgcctggtgctaagggagaggctggagacaacggtgctaag
ggtgatgctggtgctccaggacctgcaggagcaactggtgcccccggacctcagggtccc
gttggtgctactggacccaagggtgcccgtggtgctgctggtcctcctggtgctactggc
ttccctggtgctgctggcagagttggacctcctggccctgctggaaacgctggaccccca
ggacctcctggaatcgctggtaaggaaggccagaaaggtaaccgtggtgagactggacct
gctgggcgcactggtgaaattggtgctgctggaccacctggtgcccctggtgagaaagga
actcctggagctgagggtcctcctggcccctctggtatccctggacctcaaggtattgct
ggtcagcgtggtattgttggtctgcctggacaaagaggcgagcgtggtttccctggtctc
cccggcccatctggagagcctggcaaacaaggaccatctggtccctctggtgagcgtgga
cctcctggacccatgggaccccctggattggctggacctcctggtgagcctggtcgtgag
ggtactcctggtaatgagggttctgctggacgtgatggtgctgctggccccaagggtgac
cgtggtgagactggcgcttctggcactcccggtgcccctggacctcctggtgctcctgga
cccgttggccctgctggaaagactggtgatcgtggagaatctggccctgctggtcctgcc
ggtgctgctggccctgctggtccccgtggaccctctggacccgctggagctcgtggagac
aagggtgagaccggtgaggctggtgagagaggcatgaagggacacagaggatttaccgga
atgcagggacccccaggacctcctggatcctctggagagcctggacctgctggagcttct
ggacccgctggacctaggggacctgccggatctgctggacccgctggtaaagatggaatg
agcggacttcctggacccattggacctcctggaccccgtggtcgcagtggagaaattgga
ccagctggacctcctggacctcccggaccccctggacctcctggaccctctggtggtgga
tttgacatcggcttcattgcccagccacaggagaaggcccctgatcccttccgctcatac
cgtgccgacgatgccaacgtgatgcgcgaccgtgacctcgaggttgacaccaccctcaag
tccctgagccaacagattgagagcatcatcagcccagatggcaccaagaagaaccctgca
cgcacttgccgtgacctgaagatgtgccacccagactggaagagcggcgagtactggatt
gaccctgaccagggctgcaaccaggatgccatcaaggtctactgcaacatggaaactggc
gagacctgcgtctacccagccgagtcctccattcccaagaagaactggtacacaagcaag
aacatcaaggagaagaagcacgtctggttcggagaggccatgaccgatggcttccagttc
gagtatggcagcgagggctccaagcctgaggatgtcaacattcagctcaccttcctgcgc
ctcatgtccactgaggcctcccagaacatcacataccactgcaagaacagcattgcatac
atggaccaggcttctggcaacctgaagaaggctcttctgctccagggctccaacgagatc
gagatcagagcagagggcaacagccgcttcacatacagtgtcactgaggatggttgcacg
tcgcacaccggtgcatggggcaagacagtcatcgactacaaaacaacgaaaacatcccgt
ctgcctattattgacatcgcccctatggacgttggtgcacctaatcaggaatttggcatt
gaagttggcccagtctgcttcttgtaa
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integrated database retrieval system
