Labeo rohita (rohu): 127161720
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Entry
127161720 CDS
T09007
Symbol
pcdh12
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-12
KO
K16499
protocadherin delta 2
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lroh04515
]
127161720 (pcdh12)
Cell adhesion molecules [BR:
lroh04515
]
Cadherins
Protocadherins
127161720 (pcdh12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
127161720
NCBI-ProteinID:
XP_050960389
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MLQVLLLLAALIECPPCQAHNVGSAPLIIQYHVWEEQPSGTKVGRLLDDLRERAETGSLE
NFQVVPHGHALPVTVDSRDGTVSTLRRLDREELCWEQAFCELSFSVLYRKGGAMHFLSVR
VEVMDQNDHSPVFPNLVQEVEISEMASLRMRIPLDRAVDPDAGPNGLQTYSLSSNEHFAL
DVRTSGGTKQAELVVIKELDRELQPSLELVLTAWDKGNPPKSGSTKVIVTILDSNDNSPV
FEKAPAVIELAEDTVRGTIVINLRATDPDQGANGEVEYSLSKHVPPDVQRLFSIHPKTGA
LTLQGPLDFEEKHVYEVDVQARDLGPNAIPSHHKLQVKLRDVNDNAPRIHITWTPPDSPV
ATISEGAPNETFLALVMVSDADSGANGQVQVHILSGSGSFRLKQIHGDNYMIVTNDTLDR
ERQMEYNLTLLAQDSGQPSLSCIKHLTVHVLDENDNAPMFTKGVYRSVLKENNTPGFQFL
NVEARDVDLDLSGRVSFSIRESNELGTPTAFFSVHPSSGAVTVQQSLDYEESHSYSFIVE
AVDQGYPPMTSSATVLVEIQDVNDNYPVIHEPLPKNGVALLSVPVNVDKGEIVTPLGDKA
LEDNNYKPRNDSSFNNPEGFLATTIRASDGDSGLNGRLSFRITDGKPSNLFFLDKTTGQL
YVNTTNGTELIGRTFKLGIAVSDMGTPMLTTRITLEVTFINFRDHLKNLSNDNQAQYSFT
MLLAICLGSTCLVLFLAIALAKTFCHPDKRDNRAYNCRQAESTYTRHPRRPQKHIRKTDI
QLVPVLRGRKEAPQEDEAEALSCTSPLVEKPHPQGQFTLTPTLARMAQNQAHAEMDGNTP
LTQSKILRKPGSIEWNGTLPYNPGTPYRTLQKPRNSSSSSFANSQTSTLRRNKNEEVKQT
TMEPLETMSSVPSNQATLRRPKTTERRGKMDESDHRQILRNLVRLSMAAFAENGSIELSS
ASPEVQQVSQLLSLLHQGQLQPRPNFRGNKYSHRTGRSGAQDADWLSTKDSGHGESEMGD
MDWDSPVDRLYEEGLNNLLTSDDVFSDIPDPAWMARLSLPLTTDYHENLFIPDGPPSPDN
HCPMAGPDESTSFSTFGKTPEKAPLDGRALISEVSSLFEMLLTQKADAQSRPPADVLYRL
SAAYRRSLGLDTANGGAAHTRQQGQTSYANPMP
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgctccaggttttgctccttctggcagctcttattgagtgtccaccctgtcaggcccac
aatgtgggctctgcccccctcattattcaatatcatgtctgggaagaacagccctcaggg
acaaaggtgggtcgcctcctggatgacctacgtgaacgtgcggaaacaggatctctggaa
aacttccaggttgtgccgcacgggcacgctctaccagtcacggttgattcaagggatggt
accgtgtcaacactacgcaggctggaccgagaagagctatgctgggaacaagcattttgt
gaactgtccttcagtgttctctacagaaagggtggtgctatgcatttcctgtcagttcgt
gtggaggtgatggaccaaaatgaccacagcccagtgtttcccaacctagtacaggaggtg
gagatctctgagatggcctcgctgagaatgcgcatccctctggaccgtgctgtagatcca
gatgcgggaccaaatggcctgcagacctactccctgtcctccaacgaacactttgctttg
gatgtccgtacttcaggagggactaagcaggctgagttagtggtcatcaaagaactggac
agggagttgcagccatctttagaactggttctaacagcctgggacaaaggaaacccacca
aaatcaggcagcacaaaagttatagtcacaattcttgactccaacgacaatagccctgtc
tttgagaaggccccggcagtcattgaactagctgaggacaccgttcgtggaacgattgtc
attaacctccgtgctacagaccctgatcaaggtgctaatggggaagttgagtactccctt
agtaaacacgtcccaccggatgttcaaagactattcagcatccatcccaaaacaggtgct
ttgactttacaaggccctttagattttgaagaaaagcatgtgtatgaggtagacgtccaa
gctcgagatctggggcccaatgcaatcccatctcaccacaagctgcaggtcaaattgcga
gatgtcaacgataatgcaccccgcatacatataacatggaccccaccagattcccctgtt
gcaacaatctctgaaggagcaccaaatgaaactttccttgctcttgtgatggtatctgat
gccgattctggggcaaatgggcaggtacaagtgcacattctgagtggatctggttccttc
agactcaaacagatccatggagacaattacatgattgtaaccaatgacacactggatcgt
gaaagacaaatggaatataatcttactcttctcgctcaggacagtggtcagccttctcta
tcttgtatcaagcatctgaccgtccatgttttggatgaaaatgataacgcgccaatgttt
accaaaggcgtctaccggagtgtcctcaaagagaacaatacacctggttttcaattcttg
aatgtggaggcacgtgatgttgacctagacctcagtggaagggtatctttctccattaga
gaatcaaatgaactggggacaccaacagcatttttctcggtccaccccagcagtggggct
gttactgtccaacaatcactggattatgaggagtcccactcctactcttttattgtggaa
gctgtagatcaaggatacccaccaatgactagtagtgcaacagtgctggttgagatacag
gatgttaatgacaattatcctgtaatccatgagccactacccaagaacggagttgcattg
ctaagtgtcccagtgaatgtggacaaaggggagattgtgactccacttggagataaagct
ctggaggataacaactataaaccaagaaatgactcttccttcaacaatcctgaaggtttt
ctggccaccaccattcgggccagtgatggagattctggtctcaatggaagactcagtttt
agaataacagatggcaagccttccaacttattttttctggacaaaactactgggcagctt
tatgttaacacaaccaatggcactgaattgatcggcagaacttttaaactgggcattgca
gtatccgacatgggaacacctatgctaaccacgagaattactttggaagtgacattcatc
aactttcgtgaccacctaaagaacttgtctaatgacaaccaggcccagtacagttttaca
atgctcttggccatctgccttggatcaacctgcctggtgttatttctagccattgctttg
gccaagacattctgtcatcctgacaaacgggacaaccgtgcttataactgtagacaagct
gagtcaacctacacccgtcacccacgacggcctcagaagcacattcgcaagactgacatc
cagttggtaccagtgcttcggggtcgtaaagaagcgccacaagaagatgaagctgaggca
ttgtcatgtacatcacctttagtggaaaaaccacatccgcagggccaatttaccctcaca
ccaacccttgctcgcatggctcaaaatcaagctcatgcagaaatggatgggaacacacca
ttaactcaaagcaagatactcagaaagcctgggagcatcgagtggaatggaacacttcct
tataacccaggaacaccatatcgaactctgcaaaagcccagaaattcttcctcctcgtct
ttcgcaaactcacagaccagcacactcagacgaaacaaaaatgaggaggtcaagcaaact
accatggagcccttagaaactatgtcttcagttcccagtaatcaagccacattacggaga
ccaaagaccacagaaagaagaggaaagatggatgagtcagaccacaggcagatcctgagg
aaccttgttcgactctctatggcggcctttgcagagaacggatctattgaactgtcctct
gcctcacctgaagtgcaacaggtgtctcagctcctgtctctgttgcatcaggggcaactc
cagcctcgaccaaattttcgtggcaacaaatattcccacaggactggccggtcaggggct
caggatgctgattggctgagcaccaaagacagtggtcatggtgagagtgaaatgggcgat
atggactgggactcacctgtggatcgcttatatgaagaaggcctcaacaatctgctgact
tctgatgatgtgttctcagacattcccgatccagcatggatggctcgtctttctcttcct
ctgacaaccgactaccacgaaaacctgtttatcccagatgggccaccctcccctgacaat
cactgtcccatggctggtcctgatgagtccacttctttctctacctttggtaaaacccca
gagaaggccccgctggatggcagagctctgatttcggaagtgagctccctgtttgagatg
cttttgacacagaaagccgatgcccagtcacgtccacctgctgacgtgctctacagactt
tcagcagcttatagacgctcgctcggcttagacactgcaaacggaggtgctgctcacaca
cgtcaacaagggcaaacttcctatgccaaccctatgccataa
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