Labeo rohita (rohu): 127162924
Help
Entry
127162924 CDS
T09007
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127162924 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127162924 (ddx5)
03009 Ribosome biogenesis [BR:
lroh03009
]
127162924 (ddx5)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127162924 (ddx5)
Spliceosome [BR:
lroh03041
]
Complex A
U1 snRNP components
U1 related factors
127162924 (ddx5)
Complex B
127162924 (ddx5)
Ribosome biogenesis [BR:
lroh03009
]
Eukaryotic type
Pre-60S particles
Helicases
127162924 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
127162924
NCBI-ProteinID:
XP_050961808
LinkDB
All DBs
Position
3:complement(30146445..30151368)
Genome browser
AA seq
612 aa
AA seq
DB search
MPGYSDRDRGRDRGYSSGPPRFGGSRNGPPPGKKFGNPGDRLRKKHWNLDELPKFEKNFY
QEHPEVSRRSTQDVEHYRRSKEITVKGRDSPKPIVKFHEANFPNYVMDVIGKQNWTDPTP
IQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLMRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDRG
GRSRGGRGGGYRDDRRDRHSGSRRDFNSYGQDNRNGDSYGQKKVFGNKTQNGSSGYNSST
GSSFNGGYSNNGQGNFGNQSGGYGNQGYQNQQFAPNQGAVQNGMNHPPPFPFNPQQMPQS
MPFPMAPPAFPQ
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgcggtcgtgacagaggttacagcagtggtccccca
cgttttggtggcagcagaaatggacctcctccaggcaagaagtttgggaatcctggtgat
cgcctgcggaaaaagcactggaacctggacgagctccccaagtttgagaagaacttctac
caggagcatcctgaagtttctcggaggtcaactcaagatgttgaacactacaggagaagc
aaggagatcacagtgaagggtcgagactctcccaaacccattgtgaagttccacgaagca
aactttccaaattatgtgatggatgtgatcggtaaacagaattggactgatccaactccc
atccaagctcaggggtggccagttgcactgagtggaaaggatatggttggcattgcacag
acaggctctggaaaaactctctcgtatctgcttcctgcaattgttcacataaaccaccaa
ccattcctggagcgtggagacggccctatttgcttggtgttggctcccacccgtgaattg
gcacagcaagtccagcaggtggcggcagagtacggcaaagcttctcgtctcaagtccacc
tgcatttacggaggcgctcccaaaggaccacagatcagggatctggaaaggggtgtcgag
atttgtatcgccacacccggaaggcttatcgacttccttgaagctggaaagacaaatctg
cgcagatgcacatatctcgtgcttgacgaagccgacaggatgctcgacatgggatttgaa
cctcagattcgcaaaatcgtggaccaaattagaccagaccgacagacactcatgtggagc
gctacgtggcccaaagaggtgaggcagctggctgaggacttcctaaaggactatgtacag
atcaacgtcggtgctctccagctcagtgccaaccataacatcctacagattgtcgacgtt
tgcaacgacggcgaaaaggaagacaaactgatgcgtctgctggaggaaatcatgagcgag
aaggagaacaagaccattatttttgtggagaccaaaaggaggtgtgacgacctcactagg
aggatgcgtagggatgggtggccagcaatgggcatccatggagacaagagccagcaggaa
agagactgggtgctcaatgagttcaaatatggcaaagcgcccatcctcatcgccacagac
gttgcctccagaggactagatgtggaggacgtcaaatttgtcattaactatgactacccc
aacaattccgaggactacattcaccgcattggccgtacggctcgcagtcagaaaaccggc
acggcctacactttctttacacccaacaacatgaaacaggctcacgaccttgtctcggtc
ctccgcgaggctaaccaagccataaaccccaagctcatccaaatggccgaagacagagga
ggtcgttcaaggggaggtcgaggtggagggtatagggatgaccggcgggatcgccactct
ggcagcaggcgggacttcaacagctatggtcaggacaaccgcaatggtgactcttacggg
caaaagaaggtgtttgggaacaaaactcaaaacggatctagcggttacaatagcagcacc
ggtagcagcttcaacgggggctacagcaataacggacagggtaacttcggcaatcagtct
ggtgggtacggaaaccaaggctatcagaaccagcagtttgctcccaaccaaggggccgtc
cagaacggcatgaaccaccctcccccgttccccttcaacccccaacagatgccacagtcc
atgccgttccccatggcccctccagcgttccctcagtaa
DBGET
integrated database retrieval system
