Labeo rohita (rohu): 127162927
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Entry
127162927 CDS
T09007
Symbol
rbbp6
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6 isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127162927 (rbbp6)
Enzymes [BR:
lroh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127162927 (rbbp6)
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
U-box type E3
127162927 (rbbp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-CCHC
zf-C3HC4_3
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-C3HC4
Siva
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
127162927
NCBI-ProteinID:
XP_050961818
LinkDB
All DBs
Position
3:complement(14676970..14689860)
Genome browser
AA seq
1782 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLHITLSDLKRQIMGREKLKAADCDLQITNAQTKEEYTDD
GALIPKNSSVIIRRIPIGGLKSTSKTYVIDRSEPSGSSKAIDDSPSISLALLSKTANLAE
TNASEEDKIKAMMSQSNHDYDPIHYAKKLVGPPPPNYTCFRCGKTGHYIRNCPTNGQDRS
FEAPQRIKKSTGIPRSFMVEVDDPNRKGVMLTNSGIYAIPTIDAEAYAIGKKEKPPFLPQ
NQSSSSEEEDPVPDELLCLICKDLMTDAVVIPCCGNSYCDECIRTCLLESDEHVCPTCKQ
SDVSPDALIANKFLRQAVNNFRNETGYTKRIRKAAAAHQAAAQGAQTPQAPAQRPPMRLT
TSRQQDPLMANVPSSAADSTPPQSAPAAPLSPVATHQPSSTPPSSSSSTVNSSSALAASN
YSPVVNSPPHTTKQDDPPLSKEPEVPASTVVPSSDTTVQTTTIPKGYHVPVIGKPNMPQH
HMHRSGQPRGSGPRPTGNRPSWEPSSSRGRGPSERPPRTQPPPVQNLPPVVPPVYVPPAL
FPPPPHPMPQPPGGVPQQYPIQYPPGQQPPPPYNIPPPVFPPVPPNVTAPWVPPGPQPPI
ANPIPNIPAAPFLSKEEFYRQQRRLKEDSQCRFVTREKKSKLEEFTNDFAKELLEYRKIQ
KERRRSYSRSKSPYRDSSYSGSSYSYSKSRSRSRSPRSYSRSVSRSRSRSRSRSRSRSRS
YSRSPYSRRGRGRSRSYRSRSRTPTYHRSRSRSPSYRGREMPGIGTGIYRSRSRSPLYRN
HSPGKKLPPPSQIEGERKYAGRYREIPPYDAKAYYGRNIDQSDPYERERYREWEREYREW
YDKYFKNYNNPPGGQMRSRAPGGRDPYTPERFAPPRPRENSPYSRGRREDYPPPPQSHGV
PQRSRGAMTYQEKCAEKYGHLHVNAAGAGRGLNKEPLKPLKDREPSGSTAADPKSMKHKK
HRKKKREDGDLFSHSDSMDESRKDDRKEDSMLMNSSRDDATPVRDEPMDSAAVLYKTTPV
KEKKEKTKSKTDKVKRKSDNSGQKKEASGKTTKPAREKESDVPREKVAPVEPAIKRVKDE
PSHKSEPSKPQSSESKLMLPRKLMQSRPIKHHQEPKPIKDEAKSKKELVKEPAKQDKGPV
KDGKVPKKEPEKPVKTEEKMPAKTVDTKQDKRKRKDDKPPAKELDAPPVKVAKMEADMAK
SSPKPKPRLESERPVEKEKVAIPSLMDIKPEPVKKIRINRETGKRISSIDRPLSGEDSAH
ATGKGRLDKSRAKLRRKVHAPDGSGSVLVDYTSTSSTGGSPVKKHEDKLDLKKTVVKTLE
EYTNDSSTPAEDEIVMIQVPRSKWEKEDYESEDDDSKVTAKAGSVNTSTSAPSEENTAVK
SADKESPNADKAPPVSKEADVKPAKDMSGDKEKDTDKEKDRERERDRGKEKDRSSTADRE
VTDKRKPSAPNQERERAQEKGSDHSSERSSSSQSSRDRQADRTEPTSRKPAGRETTTAPT
SRKAEHRDDAREHLRSKDERNPIRRRVSPSPPPRVKDSHTDSGRKTLETPQESQSPSRNK
RAPSQNAPELKRTGPEDHKGDWPSSKESQGSRHSDVRPAKDREHRTPHRALTPEPRTDAE
KGGAHGDHIKSIPSARSTRLSSDLARETDEAAFVPDYSESDSETSDVESKMEQRGRERDS
SGSQSPSPSGSHGHSSTPSSPGSQDSKKKKKDKKEKKEKKKHKKHKKHKKHKKHTSNESE
SDLKGQKHKHKKKKSKKSKDKDKDDKEKDESERDEHKAKASV
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtgtccattacaagttttcttctaaacttaactacgacacggtcaccttcgat
ggccttcatatcacgctcagtgatttgaaacgccagatcatggggcgagaaaagctgaag
gccgcggattgcgacctgcaaatcaccaacgctcagactaaagaagaatacactgatgat
ggagccctcatccccaaaaactcgtctgtcatcatcagacgaatccctattggagggctt
aagtcgacaagcaaaacatatgtcatcgatcgatctgaaccaagtggatcttcaaaagca
attgatgattctccatccatttcactggccctgctttcaaagacagccaatcttgctgaa
acaaatgcatccgaggaagacaaaataaaagcaatgatgtctcagtccaaccatgactat
gacccaatccattatgcaaagaagcttgttggtccacctcctccaaactacacatgcttt
cgttgtggaaaaactggacattatattcgaaactgcccaacgaatgggcaggatcgaagt
tttgaagctcctcaacggataaagaaaagcacaggaattcctcggagtttcatggtggag
gttgatgatccaaacagaaagggagtcatgttgaccaacagtggaatatatgccattcct
actattgatgctgaggcctatgccattgggaagaaagagaagccaccgtttttgccccag
aatcaatcttcatcctcagaggaagaagatccagtacctgacgagctgctctgtttgatc
tgcaaggatcttatgacggacgctgtggttatcccctgctgtggaaatagctactgtgat
gagtgtattcgaacgtgtttgctggagtctgacgaacatgtttgcccaacctgcaaacaa
tcagatgtatctcctgatgctttgatcgcgaacaaatttttgcgccaagcagtgaataat
ttcaggaatgaaactggatacaccaagaggattcgaaaagccgcagctgctcatcaagca
gctgctcaaggagcccaaacaccacaggctcctgcccagcggccacctatgagactaaca
acctcacgccagcaggaccctctgatggccaatgttccaagctcagcagctgatagcacc
cctccccaaagcgcacctgccgctcctttatctcctgttgccactcatcagccctccagc
accccaccttcttccagcagctccactgtaaacagcagcagtgcacttgcagcgtcgaac
tatagccctgtggtgaattctcctccgcacactactaagcaggatgatcctcctttgtca
aaggaaccagaggtcccagcatctactgttgtgccttcatcagacaccactgtccagaca
acaactattccgaagggataccatgtcccagtaattggaaagccgaatatgcctcagcac
cacatgcacagatcagggcagccaaggggtagtggaccaaggccgactggaaaccgtcct
tcatgggagccgtcctcaagtagagggagaggtcctagtgagcgaccaccaagaacacag
cctcctccagtacaaaaccttcctcctgtagttcctccagtctatgtgcctcctgctctt
tttcctcctccaccacatcctatgcctcagccacctggtggtgttccacagcagtatccc
atacagtatcctccaggacagcagcctccacctccctacaacattccaccacctgtattt
ccacctgtcccaccaaatgtgaccgctccatgggtgcctcctggtccgcagccacctata
gccaaccctatccctaatattccagcggcaccttttctatccaaggaggagttttaccgt
cagcagcgtagactgaaggaggattcccaatgtcgattcgttaccagggagaagaagtct
aaacttgaggagtttaccaatgactttgccaaagagcttttggagtacagaaagatccag
aaggagagaaggcgatcctactctagatcaaaatctccttacagggattcctcttacagt
ggctcatcatattcctattcaaaatctcgctctcggtccagatcaccacgctcctactct
cgatcagtttcccgatctcggtcaagatcccgctcacgctctcgttccagatcacgctcc
tactctcgctcaccgtactcccgcaggggccgagggcgaagccgtagctatcgatctagg
tcacgcacgccaacatatcatcgctcccgcagtagatcaccatcttataggggtcgggag
atgcctggaataggaactggaatctatcgttcccgctccagatccccactctataggaat
cacagtcccggcaagaaactcccacccccttctcaaatcgagggtgagcgcaaatatgca
gggaggtacagagagatcccaccttacgacgccaaggcttattatggccgcaacatagac
cagagtgacccctatgagagagagcgatatagagagtgggaaagagagtacagggagtgg
tacgataaatactttaagaactacaacaacccaccaggtggtcaaatgagaagccgtgct
ccaggtggcagagacccctatacccctgagcgttttgctcctccccgaccaagagaaaac
tccccctacagcaggggacgtcgggaggattatccgccgccacctcagagccatggtgtc
ccacagagaagcagaggagccatgacataccaagagaagtgtgctgagaagtatggccac
cttcatgtcaacgccgctggagcagggagaggacttaacaaagagcctttgaaacctctc
aaggacagagaacccagtggcagcactgctgcagaccccaagtctatgaagcataaaaag
catcgcaaaaagaagagagaagatggtgaccttttcagccactctgactctatggatgaa
tccaggaaagatgaccgtaaggaggactccatgctgatgaattcgagtcgtgacgatgcc
acacctgtcagagatgagcccatggatagtgctgcagtgctctacaagactacccctgta
aaggaaaagaaagagaagactaaaagcaaaactgacaaagttaaacgaaagtctgacaac
agtgggcagaagaaggaagcatcaggaaagacgacaaaacctgccagagagaaagaatct
gatgtaccgcgagagaaggtggctcccgttgaaccagccattaagagagtcaaagatgaa
ccatcccacaaatctgaaccaagcaaacctcaatcctcagagtccaaactcatgctccca
cgcaagttgatgcagtctaggcccatcaaacaccatcaggagccgaagcctatcaaagat
gaggccaaaagcaagaaagaattggtgaaagaacctgcaaagcaagacaaaggtcctgtc
aaagatgggaaggtccctaaaaaagagccagagaagcctgtgaaaactgaggagaagatg
cccgctaagacagttgatactaaacaggataagagaaaacgaaaagatgacaagccacct
gcaaaagagctagatgctcctccagtaaaagtagcaaaaatggaagctgacatggccaaa
agctctccaaaacctaaacccagactggagagcgaaaggccagttgaaaaggagaaagta
gctattccatctctgatggatattaagcccgagcctgtaaaaaagatcagaatcaacagg
gaaactggcaagagaatatctagcattgatcggccactttcaggggaggactctgctcat
gccacgggaaagggcagactggacaagtccagagcaaaattgagaaggaaggttcatgct
cctgatgggtcagggtccgtattggttgattacaccagcaccagttccacaggtggaagc
cccgtcaaaaagcacgaggataagcttgacctaaagaagactgtggtgaagaccctagag
gaatacaccaatgacagctccacccctgccgaggatgaaattgtcatgatccaagtgccc
cgttccaagtgggaaaaggaggactatgaatctgaggacgatgactcaaaggttaccgcc
aaagcaggcagtgtcaacacatccacttctgctccttcagaggagaacactgcagtgaaa
tcagctgacaaggagtctccgaatgctgacaaagctccacctgtctccaaagaggcagac
gtcaaacctgccaaggacatgtcgggtgataaggagaaagatactgacaaggagaaagac
agagagcgagaacgagacagagggaaagaaaaagaccgcagcagcactgcagatcgtgag
gtaactgataagcggaaacctagcgcacctaatcaggaaagagagcgcgcacaggagaag
ggcagcgaccatagcagtgaacgaagctcctcttcccagtcctccagagataggcaagca
gacaggactgaacctacctctagaaaaccagcaggaagagagacgacaacagcccccacc
agtaggaaagcagagcatcgagatgatgcaagagagcacttaagatcaaaagatgagaga
aatccaatcaggaggagagtatcaccctccccgcccccaagggtaaaggactcgcacaca
gactctggaagaaaaactcttgaaacgcctcaggagtcgcaaagtccaagtaggaataag
agagcaccatcgcagaatgccccagagctgaaacgaacagggccagaggaccacaaaggg
gactggccatccagtaaagagagtcagggttctagacattctgatgtacgtcccgcaaag
gaccgggaacacaggactcctcatagagctttgactccagagcctaggactgatgcagag
aaaggtggcgcacatggcgaccacatcaaatcaatcccatctgcacgctctacaagactg
tcctccgatttagcacgggaaacggacgaggcggcgtttgtccctgactacagcgaaagc
gacagcgagacctcggacgttgagagcaaaatggagcagagaggacgagagagggacagc
agtggcagccagagtccgagcccatctggaagccacgggcacagcagcacccccagttct
ccgggcagtcaggacagcaaaaagaagaaaaaggacaaaaaggagaagaaggaaaagaag
aaacacaagaagcacaaaaaacacaaaaagcataagaaacatacgagtaatgagtctgaa
tcagacctcaaaggacagaaacacaaacataagaaaaagaagtctaaaaagagcaaggac
aaagacaaagatgacaaggagaaagatgagagtgagagagacgaacataaggctaaagca
tccgtttga
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integrated database retrieval system
