Labeo rohita (rohu): 127162981
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Entry
127162981 CDS
T09007
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03440
Homologous recombination
lroh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127162981 (top3a)
03460 Fanconi anemia pathway
127162981 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lroh03032
]
127162981 (top3a)
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127162981 (top3a)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
127162981 (top3a)
DNA replication proteins [BR:
lroh03032
]
Eukaryotic type
DNA Topoisomerases
127162981 (top3a)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
127162981 (top3a)
FA (Fanconi anemia) pathway
127162981 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
127162981
NCBI-ProteinID:
XP_050961900
LinkDB
All DBs
Position
3:11778003..11789059
Genome browser
AA seq
1006 aa
AA seq
DB search
MNVLFRSLRGTIDSRLSRQISVSMIRRTQIKKVLCVAEKNDAAKGIAEIMSNGRSRRREG
YSVYNKIYEYEYNLFGQNVTVSMTSVSGHLLGLEFKAPFQKWHSCNPVLLFDAEVEKYCP
ENFIPIKRTLEREVRQCQALVVWTDCDREGENIGFEIIDVCKAVKPNVQVFRARFSEITP
NSIRRACETLTEPDINVSDAVDVRQELDLRIGASFTRFQTLRLQKIFPESLSDQLISYGS
CQFPTLGFVVERFKAIQAFVPETFFKIKVVHEPNEEESVEFSWKRHRLFNHTACLVLYQM
CMEDPMAKVISVTSKPKSKWRPLPLDTVELEKLASRKLRISAKETMKIAEKLYTQGFISY
PRTETNMFPQNLNLTMLVEQQTQDNEWGNFAQRILESGGPTPRNGNKSDQAHPPIHPTKY
TNSLQGNEKRLYEFIVRHFLACCSKDAQGQEVTVEIEIAEERFSASGLTIIARNYLEVYP
YDKWYNKVIPLYTADTTFQPTAIEMVEGQTSPPQLLTEADLISLMEKHGIGTDATHAEHI
ETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPDLRAELEADLKLVSEGRKDK
ASVLSYHVAKYKAVFIESVRKAKKLDEALSNYLGPAQEITEQEQGEMEIPLPVRKCPQCN
RDMVLKKKKDSTGMFLSCMGYPACKAAVWFPDTVLEVSRDESVCPTCRPPPVHMLKFKFK
RGSLPPMMPLEFVGCIGGCDETLREVLNLKYIRGGEADSGSRAHTGSGSNQHHVPRTNSA
PPSRVENIRPPAPRANGNRPPASLPPPRAAQPPASAQGGDIVCNCGQEAILLTVRKEGPN
QGRQFYKCNTGDCKFFLWADQPAEQAAPGGSRGPLSQNSQPPRPSIGFGNIPQQRQNNRA
PGGDDGETMCNCNEPAVTRTVMKDGPNKGRMFHTCGKPRDQQCGFFQWANENVAPATGFS
GGNGARHPGNKKPSTTSNKPPAAKRQRTCGLCHEPGHTRVTCPQGR
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttttgtttagatcactgagagggaccattgacagtcgactttctaggcaaata
tctgtaagcatgattagacgtacacagattaagaaagtgctctgtgttgctgagaaaaac
gatgcagctaagggcatagcagagatcatgtcaaatgggagatcgagaagaagagagggc
tactctgtttacaacaaaatatatgagtacgaatacaacctgtttggtcaaaatgtaact
gtaagcatgacatctgtgtcaggacatctcttgggtcttgaattcaaagctccttttcag
aaatggcatagttgtaatccagtcctgttgtttgatgctgaggtggaaaagtactgccct
gagaactttataccgatcaaaaggactttggagagagaggtgagacagtgtcaagctctg
gtcgtttggactgattgtgacagagaaggagaaaatatcggctttgagatcattgatgtc
tgcaaagcagtgaagccaaatgttcaggtcttccgtgcgcgcttctctgagatcacccca
aactccataaggagagcctgtgagacccttactgagccggatatcaacgtcagtgatgca
gtggatgtgagacaggagctggatctccgcatcggggcatcatttaccaggttccagaca
ttacgcttgcagaagatattcccagaatctctctccgatcagctcatcagttatggcagt
tgtcagttccccacccttggctttgtagtagagcggtttaaagccattcaagccttcgtc
cctgaaactttctttaaaatcaaagttgtccatgagcctaatgaagaggaatcggtagaa
ttcagctggaaaagacatcgtcttttcaatcacactgcatgccttgtgctgtaccagatg
tgcatggaggatcccatggcgaaagtgatatctgtaacaagtaaaccgaaaagcaaatgg
cgaccgttacctcttgacactgtggaacttgaaaaactggcttcaagaaaactgaggata
agtgccaaagaaaccatgaaaatcgcagaaaagctgtacacacaagggtttatcagttat
cctcgtactgagaccaacatgtttccacagaacctgaaccttaccatgctggttgagcaa
cagacacaagacaacgaatggggaaattttgctcagcgcattttggaaagcggtgggccc
acacctcgaaatggaaacaaatcagatcaggcccacccccccattcaccccaccaaatac
accaacagtttacagggaaatgaaaagcggctgtatgagttcattgtacgtcacttccta
gcctgttgctccaaagatgctcagggtcaagaggtgacggttgaaattgaaatagctgaa
gagagattctctgctagtggattgacgatcattgcacgcaattatctggaagtgtacccc
tatgacaagtggtacaataaggttattccattatacacggctgacaccacattccagccc
acagcaattgagatggtggaaggacagaccagtccaccacagcttctgacagaggccgat
ttgatatcgctcatggagaaacatggcattggtaccgatgcaacacatgctgaacacatt
gagaccataaagagccgcatgtacgtgggtctgacggctgaccagaggttccttcctgga
gaacttggcatgggtctggttgaagggtataactcaatgggatatgagatgtctaaacca
gacttgagagcggagctggaggccgaccttaaacttgtgtcagagggccgaaaggacaaa
gcttctgtcctcagttatcatgtggcaaaatacaaggctgtttttatagagtccgtgagg
aaggcaaaaaaattggatgaggctttgtccaattatctgggccctgctcaggaaattact
gaacaggagcaaggagaaatggagataccattaccagtacgaaagtgtcctcagtgtaac
cgtgacatggtgctaaaaaagaagaaagacagcacagggatgtttctttcatgtatggga
tatccagcttgtaaagcagccgtgtggtttccagacacagttctggaggtcagcagagac
gagagtgtctgtccaacttgccgtccacctccagtgcatatgctgaagtttaaattcaag
aggggaagtttgccacctatgatgcctcttgaatttgttggatgcatcggtggatgtgac
gagactctcagagaggtcttaaacttaaaatatatccgaggaggagaagcagattctggc
tctcgggcacataccggctctggatcaaaccagcatcatgtacctagaaccaactcagca
ccgccatccagggtggagaacattagacctccagcacccagagccaacggtaaccgtccc
ccagccagtctgccacctccacgggcagcacaaccaccagcttcagcccagggtggggac
attgtgtgtaactgtggccaggaagccattcttctcactgtacgcaaagaaggtcccaat
caaggccgtcagttttacaagtgtaacacaggagactgtaaattcttcctgtgggctgat
cagccagctgagcaggcagcgcctggagggagcagaggacccctcagtcagaattcgcaa
cctcccaggccctcaattggctttgggaacatacctcagcagaggcaaaacaacagagca
cctggaggtgatgatggggaaactatgtgtaactgtaatgagcctgcagtgaccaggacc
gtcatgaaagatgggccaaacaaaggacgaatgttccatacctgtgggaaaccacgtgat
cagcagtgtgggttcttccagtgggcgaacgaaaatgtggctccagccacaggtttctct
ggaggaaatggtgccagacatcccgggaacaaaaagcccagcactacctccaacaaacct
ccagccgccaaaaggcaaagaacctgtggattatgtcatgagccgggtcacacacgggtc
acctgtccacagggcagatga
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